DRSC/TRiP Functional Genomics Resources

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Protein Alignment loqs and CG12493

DIOPT Version :10

Sequence 1:NP_609646.1 Gene:loqs / 34751 FlyBaseID:FBgn0032515 Length:465 Species:Drosophila melanogaster
Sequence 2:NP_647927.3 Gene:CG12493 / 38575 FlyBaseID:FBgn0035571 Length:296 Species:Drosophila melanogaster


Alignment Length:174 Identity:38/174 - (21%)
Similarity:67/174 - (38%) Gaps:43/174 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   186 GRSKKEAKHAAA----RALIDKLIGAQLPESPSSSAG------PSVTGLTVAGSGGDGNANATG- 239
            |.|:..|.:||.    |.::...:.|.|.|..:||.|      ..:|...|.......|::|.. 
  Fly   137 GSSENSAGNAACEKALREILTTKMKALLAEPENSSGGDEDNILEKMTSYAVYKLAEKWNSDAIDV 201

  Fly   240 ---GGDASDKTVGNPIGWLQEM------C---MQRRWPPPSYETETEVGLPHERLFTIACSILNY 292
               ..|..:|...:.:|.|.::      |   ||.| |..:::.....| .:.::|::..|:.|.
  Fly   202 AALYNDVKNKKTSSSVGQLPKLWKNMHPCMVLMQMR-PQTTFKFLGSSG-ENRKVFSMGVSVDNC 264

  Fly   293 REMGKGKSKKIAKRLAAHRMWMRLQETPIDSGKISDSICGELEG 336
            .....|.:||.|:|                  |::..:|.:|.|
  Fly   265 EFKADGPTKKDARR------------------KVAALVCNKLFG 290

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
loqsNP_609646.1 DSRM_PRKRA-like_rpt1 134..206 CDD:380691 6/23 (26%)
DSRM_PRKRA-like_rpt2 250..316 CDD:380692 16/74 (22%)
DSRM_PRKRA-like_rpt3 393..463 CDD:380693
CG12493NP_647927.3 DSRM_SF 95..155 CDD:444671 6/17 (35%)
DSRM_SF 227..284 CDD:444671 15/76 (20%)
Blue background indicates that the domain is not in the aligned region.

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