DRSC/TRiP Functional Genomics Resources

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Protein Alignment loqs and stau

DIOPT Version :10

Sequence 1:NP_609646.1 Gene:loqs / 34751 FlyBaseID:FBgn0032515 Length:465 Species:Drosophila melanogaster
Sequence 2:NP_476751.1 Gene:stau / 37065 FlyBaseID:FBgn0003520 Length:1026 Species:Drosophila melanogaster


Alignment Length:108 Identity:25/108 - (23%)
Similarity:45/108 - (41%) Gaps:24/108 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 RKAAHWIRQENAKLFRHMEADPPVQAFVPTMVYNEESQVETTDLQQLIDSVEVKDAILVYNLLKK 156
            :|||..:.:   .|:.|        .|..|.::.:.:|.|..:..:|...  .:..|||...:..
  Fly   575 KKAADSLEE---FLYNH--------NFPVTSIHGDRTQAEREEALRLFRC--GRCPILVATAVAA 626

  Fly   157 NGIEVGDELKQQLLELLCFYNHEDTLPEQFIEERWFRQGTVGR 199
            .|::: ..:||.:       |.:  ||.: :||...|.|..||
  Fly   627 RGLDI-PNVKQVI-------NFD--LPAE-VEEYVHRIGRTGR 658

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
loqsNP_609646.1 DSRM_PRKRA-like_rpt1 134..206 CDD:380691 16/66 (24%)
DSRM_PRKRA-like_rpt2 250..316 CDD:380692
DSRM_PRKRA-like_rpt3 393..463 CDD:380693
stauNP_476751.1 DSRM_STAU_rpt1 311..373 CDD:380686
DSRM_STAU_rpt2 473..553 CDD:380687
DSRM_STAU_rpt3 579..643 CDD:380688 14/86 (16%)
DSRM_STAU_rpt4 711..780 CDD:380689
DSRM_STAU_rpt5 952..1019 CDD:380690
Blue background indicates that the domain is not in the aligned region.

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