DRSC/TRiP Functional Genomics Resources

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Protein Alignment loqs and Tarbp2

DIOPT Version :10

Sequence 1:NP_609646.1 Gene:loqs / 34751 FlyBaseID:FBgn0032515 Length:465 Species:Drosophila melanogaster
Sequence 2:NP_001030113.1 Gene:Tarbp2 / 363006 RGDID:1307375 Length:365 Species:Rattus norvegicus


Alignment Length:401 Identity:132/401 - (32%)
Similarity:193/401 - (48%) Gaps:84/401 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 GSGLQGGVGLMGVILPSDEALKFVSETDANGLAM---KTPVSILQELLSRRGITPGYELVQIEGA 161
            |||...|.|     |||.|.:          ||.   |||:|:|||..:|.|.||.|:|::.||.
  Rat     7 GSGSTTGCG-----LPSIEQM----------LAANPGKTPISLLQEYGTRIGKTPVYDLLKAEGQ 56

  Fly   162 IHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAARALIDKLIGAQLPE---------SPSSSA 217
            .|:|.|.|||:..|.    :..|.|.|||.|||.||...:..|.|..:.|         |...|:
  Rat    57 AHQPNFTFRVTVGDT----SCTGQGPSKKAAKHKAAEVALKHLKGGSMLEPALEDSSSFSLLDSS 117

  Fly   218 GPSVTGLTVAGSGGD-GNANATGGGD-------ASDKTVGNPIGWLQEMCMQRRWPPPSYETETE 274
            .|..|.:..|.:... .:|..|....       :..::..||:|.|||:.:|:.|..|.|....|
  Rat   118 VPEDTAVIAAEAAAPVPSALLTRSPPMEMQPPVSPQQSECNPVGALQELVVQKGWRLPEYMVTQE 182

  Fly   275 VGLPHERLFTIACSILNYREMGKGKSKKIAKRLAAHRMWMRLQETPIDS--GKISDSICGELEGE 337
            .|..|.:.||:.|.:..:.|:|.|.|||:|||.||.:|.:|:...|:|:  |.         |.|
  Rat   183 SGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAKMLLRVHTVPLDARDGN---------EAE 238

  Fly   338 PRSSENYYGELKDISVPTLTTQHSNKVSQFHK--------TLKNATGKKLLKLQKTCLKNNKIDY 394
            |  .::::    .|.|       |:::.....        :|:|:.|:|:|.     |:|..:..
  Rat   239 P--DDDHF----SIGV-------SSRLDGLRNRGPGCTWDSLRNSVGEKILS-----LRNCSVGS 285

  Fly   395 I--------KLLGEIATENQFEVTYVDIEEKTFSGQFQCLVQLSTLPVGVCHGSGPTAADAQRHA 451
            :        .:|.|::.|..|.|:|:||||.:.||..||||:|||.|..||:||..|...|:..|
  Rat   286 LGSLGSACCSILSELSAEQAFHVSYLDIEELSLSGLCQCLVELSTQPATVCYGSATTREAARGDA 350

  Fly   452 AQNALEYLKIM 462
            |:.||:||:||
  Rat   351 ARRALQYLRIM 361

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
loqsNP_609646.1 DSRM_PRKRA-like_rpt1 134..206 CDD:380691 33/71 (46%)
DSRM_PRKRA-like_rpt2 250..316 CDD:380692 28/65 (43%)
DSRM_PRKRA-like_rpt3 393..463 CDD:380693 34/78 (44%)
Tarbp2NP_001030113.1 Sufficient for interaction with PRKRA. /evidence=ECO:0000255|HAMAP-Rule:MF_03034 22..105 37/96 (39%)
DSRM_TARBP2_rpt1 27..98 CDD:380719 33/74 (45%)
Sufficient for interaction with PRKRA. /evidence=ECO:0000255|HAMAP-Rule:MF_03034 151..233 31/81 (38%)
DSRM_TARBP2_rpt2 158..224 CDD:380681 28/65 (43%)
Sufficient for interaction with DICER1. /evidence=ECO:0000255|HAMAP-Rule:MF_03034 227..365 50/162 (31%)
Sufficient for interaction with PRKRA. /evidence=ECO:0000255|HAMAP-Rule:MF_03034 286..365 34/76 (45%)
DSRM_TARBP2_rpt3 291..362 CDD:380722 34/71 (48%)

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