DRSC/TRiP Functional Genomics Resources

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Protein Alignment loqs and stau1

DIOPT Version :9

Sequence 1:NP_609646.1 Gene:loqs / 34751 FlyBaseID:FBgn0032515 Length:465 Species:Drosophila melanogaster
Sequence 2:NP_991124.2 Gene:stau1 / 334440 ZFINID:ZDB-GENE-030131-6372 Length:702 Species:Danio rerio


Alignment Length:472 Identity:104/472 - (22%)
Similarity:167/472 - (35%) Gaps:157/472 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 LKKEKISAQVAQLS-QPGQLQLSDVGDPALAGGSGLQGGVGLMGVILPSDEALKFVSETDANGLA 132
            |:||.|..|:.::: :|.|..|:                                          
Zfish   261 LQKEPILQQITEMTDEPAQENLN------------------------------------------ 283

  Fly   133 MKTPVSILQELLSRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAA 197
             |:.:|.:.|:..:|.:...:|:::..||.|..:|..||...:    |...|.|:|||.||..||
Zfish   284 -KSEISQVFEIALKRNMPVDFEVLKEAGAPHMKSFVVRVVVGE----FAGEGEGKSKKIAKKQAA 343

  Fly   198 RALIDKLIGAQLPESPSSSAGP--------SVTGLTVAGSGGDGNANATGGGDASDKTVGNPIGW 254
            .|::::|  .:||:.|::...|        |:..|..:...|.|.               |||..
Zfish   344 IAVLEEL--RRLPQLPATDKIPLRIKKKSKSIIKLQTSPEYGQGM---------------NPISR 391

  Fly   255 LQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYREMGKGKSKKIAKRLAAHRMW------ 313
            |.::...::...|.|...||.|||..|.|.:..|:......|.|.|||:|||.||.:|.      
Zfish   392 LAQIQQAKKEKEPEYTLVTERGLPRRREFVMQVSVAGQNAEGMGPSKKVAKRNAAEKMLELLGFK 456

  Fly   314 ----------MRLQETPIDSGKISDSICGELEG------EPRSSEN---YYGELKDISVPTLTTQ 359
                      ::..|.| .:.|:.|       |      ||.|.|.   ...:.:|..:|.|:.|
Zfish   457 VPQPQPPKPALKTDEKP-PAKKLGD-------GRKVTFFEPGSMEKAGLVVSKEEDFRLPFLSHQ 513

  Fly   360 H-----------------SNK---VSQFHKTL----KNATGKKLLK--------------LQKTC 386
            .                 :|:   ...:.:|.    .|||...::.              :.|| 
Zfish   514 QLPAGILPMVPEVAQAVGANQGPHAKDYGRTAAPNPANATVTAMIANELLYAGTSPTAEGILKT- 577

  Fly   387 LKNNKIDY---------IKLLGEIATENQFEVTYVDIEEKTFSGQFQCLVQLSTLPVGVCHGSGP 442
              ||.:.:         .:.|..:|.....:|.|.|. .|....:|..|:..|:.|..:.||.|.
Zfish   578 --NNSLAHRPQGPLTRPSEQLSYLANVQGLQVEYKDF-PKNNKNEFVSLINCSSQPPLISHGIGK 639

  Fly   443 TAADAQRHAAQNALEYL 459
            ........||.|.|:.|
Zfish   640 DVESCHDMAALNILKLL 656

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
loqsNP_609646.1 DSRM 136..204 CDD:214634 21/67 (31%)
DSRM 250..316 CDD:238007 25/81 (31%)
DSRM 394..460 CDD:214634 18/75 (24%)
stau1NP_991124.2 DSRM 75..138 CDD:214634
DSRM 287..350 CDD:214634 21/66 (32%)
DSRM 387..453 CDD:238007 25/65 (38%)
Staufen_C 551..660 CDD:293091 25/110 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170593989
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3732
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.740

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