DRSC/TRiP Functional Genomics Resources

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Protein Alignment loqs and Stau2

DIOPT Version :9

Sequence 1:NP_609646.1 Gene:loqs / 34751 FlyBaseID:FBgn0032515 Length:465 Species:Drosophila melanogaster
Sequence 2:NP_001007150.2 Gene:Stau2 / 171500 RGDID:621479 Length:571 Species:Rattus norvegicus


Alignment Length:366 Identity:89/366 - (24%)
Similarity:145/366 - (39%) Gaps:93/366 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   125 ETDANGLAMKTPVSILQELLSRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSK 189
            :.|||    |:.:|::.|:..:|.:...:|:::..|..|..:|..|||..:    |:|.|.|.||
  Rat   201 DKDAN----KSEISLVFEIALKRNMPVSFEVIKESGPPHMKSFVTRVSVGE----FSAEGEGNSK 257

  Fly   190 KEAKHAAARALIDKLIGAQLP-----ESPS----------SSAGPSVTGLTVAGSGGDGNANATG 239
            |.:|..||..::.:|  .:||     |.|.          ..|||..         |.|.     
  Rat   258 KLSKKRAATTVLQEL--KKLPPLPVIEKPKLFFKKRPKTIIKAGPEY---------GQGM----- 306

  Fly   240 GGDASDKTVGNPIGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYREMGKGKSKKIA 304
                      |||..|.::...|:...|.|...:|.|:|..|.|.:...:.|....|.|.:||||
  Rat   307 ----------NPISRLAQIQQARKEKEPDYVLLSERGMPRRREFVMQVKVGNEVATGTGPNKKIA 361

  Fly   305 KRLAAHRMWMRLQETPIDSGKISDSICGELEGEPRSSEN--YYGELKDISVPTLTTQHSNKVSQF 367
            |:.||..|.::|      ..|.|.|:..:|:   ::.||  :.|.......|.            
  Rat   362 KKNAAEAMLLQL------GYKASTSLQDQLD---KTGENKGWSGPKPGFPEPA------------ 405

  Fly   368 HKTLKNATGKKLLKL-----QKTCLKNNKIDYIKLLGEIATE--NQFEVTYVDIEEKTFSGQFQC 425
                 |.|.|.:|.|     |:.....:::.....||.::.:  ||...::..:|..:.:.....
  Rat   406 -----NNTPKGILHLSPDVYQEMEASRHRVTSGTTLGYLSPKDMNQPSSSFFSVESPSPTSSAPA 465

  Fly   426 ---LVQLSTLP----VGVCHGSGPTAADAQRHAAQNALEYL 459
               |:...|.|    :|: .||.||...:....::. ||||
  Rat   466 ARELLMNGTSPAAEAIGL-KGSSPTPPCSSVQPSKQ-LEYL 504

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
loqsNP_609646.1 DSRM 136..204 CDD:214634 20/67 (30%)
DSRM 250..316 CDD:238007 23/65 (35%)
DSRM 394..460 CDD:214634 17/75 (23%)
Stau2NP_001007150.2 DSRM_SF 3..70 CDD:412133
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 71..94
DSRM_STAU2_rpt2 98..179 CDD:380711
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 178..203 0/1 (0%)
DSRM_STAU2_rpt3 206..272 CDD:380713 21/69 (30%)
Nuclear localization signal 1 273..317 13/67 (19%)
DSRM_STAU2_rpt4 304..389 CDD:380715 29/108 (27%)
Nuclear localization signal 2 373..412 12/64 (19%)
Required for dendritic transport 381..571 28/146 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 382..413 8/50 (16%)
Staufen_C 457..524 CDD:374568 12/50 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 546..571
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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