DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment loqs and Adarb1

DIOPT Version :9

Sequence 1:NP_609646.1 Gene:loqs / 34751 FlyBaseID:FBgn0032515 Length:465 Species:Drosophila melanogaster
Sequence 2:XP_006513125.1 Gene:Adarb1 / 110532 MGIID:891999 Length:775 Species:Mus musculus


Alignment Length:593 Identity:120/593 - (20%)
Similarity:182/593 - (30%) Gaps:214/593 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 VGLGNGNAVSGSPVKGAPLG------------------QRHVKLKKEKISAQVAQLSQPGQLQLS 90
            :.||...|||.|.|..|.||                  :|..|..:.|....:.|...|.:....
Mouse     1 MSLGLAGAVSHSSVHMASLGLGTLTVGAFFSFVGRRYKRRRKKRSERKDKRGLRQSRSPQKCFTM 65

  Fly    91 DVGD---------------------------PALAGGSGLQGGVGLMGVILPSDEALKFVSETDA 128
            |:.|                           |....|..|..|.|       ...:.|...|..:
Mouse    66 DIEDEENMSSSSTDIKENRNLDNMPPKDSSTPGPGEGIPLSNGGG-------GSTSRKRPLEEGS 123

  Fly   129 NGLA-------MKTPVSILQE--LLSRRGITPG--YELVQIEGAIHEPTFRFRVSFKDKDTPFTA 182
            ||.:       .|||..:|.:  |:....|.||  |.|:...|.:|.|.|...|....:    ..
Mouse   124 NGHSKYRLKKRRKTPGPVLPKNALMQLNEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQ----VF 184

  Fly   183 MGAGRSKKEAK-HAAARALIDKLIGAQLPESPSSSAGPSVTGLTVA------------------- 227
            .|:|.:||:|| |||.:||      ....:.|::|......|.|::                   
Mouse   185 EGSGPTKKKAKLHAAEKAL------RSFVQFPNASEAHLAMGRTLSVNTDFTSDQADFPDTLFNG 243

  Fly   228 -------------GSGGDGNANATGGGDASDKTVGNPIGWLQ-EMCMQRRWPPPS---------- 268
                         ||.||.:.:::|....|...|  |....| .:.:...:||||          
Mouse   244 FETPDKSEPPFYVGSNGDDSFSSSGDVSLSASPV--PASLTQPPLPIPPPFPPPSGKNPVMILNE 306

  Fly   269 ------YETETEVGLPHERLFTIACSILNYREMGKGKSKKIAKRLAAHRMW-----MRLQETP-- 320
                  |:..:|.|..|.:.|.::..:......|.|::||:||..||....     :.|.:||  
Mouse   307 LRPGLKYDFLSESGESHAKSFVMSVVVDGQFFEGSGRNKKLAKARAAQSALATVFNLHLDQTPSR 371

  Fly   321 --------------IDSGKISDSICGELEGEPRSSENYYGELKDISVPTLTTQHSNKVSQFHKTL 371
                          :.:..:|..:.|:......:..:.:...|.:|...:||....|.:   |.:
Mouse   372 QPVLSEGLQLHLPQVLADAVSRLVLGKFSDLTDNFSSPHARRKVLSGVVMTTGTDVKDA---KVI 433

  Fly   372 KNATGKK-----------------------------LLKLQKTCLKNNKIDYIKLLGEIATENQF 407
            ..:||.|                             .|..|.....|||.|..|           
Mouse   434 SVSTGTKCINGEYMSDRGLALNDCHAEIISRRSLLRFLYAQLELYLNNKEDQKK----------- 487

  Fly   408 EVTYVDIEEKTFSGQF------QCLVQLSTLPVG----------VCHGSGPTA----ADAQRHAA 452
                 .|.:|:..|.|      |..:.:||.|.|          |..|..|.:    ..|.||..
Mouse   488 -----SIFQKSERGGFRLKDTVQFHLYISTSPCGDARIFSPHEPVLEGMTPDSHQLTEPADRHPN 547

  Fly   453 QNALEYLK 460
            :.|...|:
Mouse   548 RKARGQLR 555

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
loqsNP_609646.1 DSRM 136..204 CDD:214634 24/72 (33%)
DSRM 250..316 CDD:238007 19/87 (22%)
DSRM 394..460 CDD:214634 17/85 (20%)
Adarb1XP_006513125.1 DSRM_RED1_rpt1 139..210 CDD:380724 23/80 (29%)
DSRM_RED1_rpt2 296..365 CDD:380727 14/68 (21%)
ADEAMc 386..772 CDD:214718 35/189 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167848505
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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