DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment loqs and prkra

DIOPT Version :9

Sequence 1:NP_609646.1 Gene:loqs / 34751 FlyBaseID:FBgn0032515 Length:465 Species:Drosophila melanogaster
Sequence 2:XP_004917795.2 Gene:prkra / 100379994 XenbaseID:XB-GENE-940706 Length:312 Species:Xenopus tropicalis


Alignment Length:343 Identity:112/343 - (32%)
Similarity:172/343 - (50%) Gaps:76/343 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   134 KTPVSILQELLSRRGITPGYELVQIEGAIHEPTFRFRVSFKDKDTPFTAMGAGRSKKEAKHAAAR 198
            |||:..|.|..::.|..|.|.|::.||.:|.|:|.||:...|    ..:.|.|.|||.||..||.
 Frog    30 KTPIQQLHEFGTKTGNPPVYTLIKAEGEVHNPSFTFRLVIGD----IVSSGEGPSKKAAKQKAAE 90

  Fly   199 ALIDKLIGA------------QLPESPSSSAGPSVTGLTVAGSGGDGNANATGGGDASDKTVGNP 251
            :.::.|.|:            .:|:.|                              .::...||
 Frog    91 SALNILQGSTGKCLPVKNTVRDVPKQP------------------------------LNQMKENP 125

  Fly   252 IGWLQEMCMQRRWPPPSYETETEVGLPHERLFTIACSILNYREMGKGKSKKIAKRLAAHRMWMRL 316
            :|.|||:.:|:.|..|.|....|.|.||||.|||.|.:..:.|.|.|.|||:|||:||.::..:|
 Frog   126 VGSLQELSVQKGWRLPEYTVAQESGPPHEREFTITCRVETFVETGSGTSKKVAKRVAADKLLTKL 190

  Fly   317 QETPIDSGKIS-DSICGELEGEPRSSENYYGELKDISVPTLTTQHSNKVSQFHKTLKNATGKKLL 380
            :..|:|:..|| :.:.|                             |.:|....:::|::|:|:.
 Frog   191 KAIPVDNMNISLNKVIG-----------------------------NNLSCTWDSMRNSSGEKIC 226

  Fly   381 KLQKTCLKNNKIDYIKLLGEIATENQFEVTYVDIEEKTFSGQFQCLVQLSTLPVGVCHGSGPTAA 445
            .|:::.|.....||:|:|.::|.|..|.:||:||:|.:.:||:|||.:|||.|:.||||:|.|..
 Frog   227 MLKRSPLSIPYTDYVKMLNDLAKEQDFRLTYLDIDELSVNGQYQCLAELSTNPITVCHGTGVTCG 291

  Fly   446 DAQRHAAQNALEYLKIMT 463
            :|...||.|||:|||||:
 Frog   292 NAHNDAAHNALQYLKIMS 309

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
loqsNP_609646.1 DSRM 136..204 CDD:214634 24/67 (36%)
DSRM 250..316 CDD:238007 31/65 (48%)
DSRM 394..460 CDD:214634 33/65 (51%)
prkraXP_004917795.2 DSRM_SF 29..98 CDD:412133 27/71 (38%)
DSRM_PRKRA_rpt2 124..190 CDD:380720 31/65 (48%)
DSRM_PRKRA_rpt3 238..309 CDD:380721 37/70 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 83 1.000 Domainoid score I8270
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2738
Inparanoid 1 1.050 187 1.000 Inparanoid score I3790
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1093169at2759
OrthoFinder 1 1.000 - - FOG0003036
OrthoInspector 1 1.000 - - otm49373
Panther 1 1.100 - - LDO PTHR46205
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2027
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.070

Return to query results.
Submit another query.