DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6523 and Glrx3

DIOPT Version :9

Sequence 1:NP_609641.1 Gene:CG6523 / 34745 FlyBaseID:FBgn0032509 Length:216 Species:Drosophila melanogaster
Sequence 2:NP_116003.2 Gene:Glrx3 / 58815 RGDID:69414 Length:337 Species:Rattus norvegicus


Alignment Length:217 Identity:102/217 - (47%)
Similarity:142/217 - (65%) Gaps:9/217 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 VVNVSAAEEYQKYINADKT---TVALFAAEWAEQCGQVKDALEELAKITGEKLQFISLNAEQFPE 64
            ||.|.:|.::::.:.. ||   .|..|.|.||.||.|:.|.:.|||| ....:.|:.|.||..||
  Rat    15 VVEVGSARQFEELLRL-KTKSLLVVHFWAPWAPQCVQMNDVMAELAK-EHPHVSFVKLEAEAVPE 77

  Fly    65 ISMKHQIEAVPTVIFFAKGSAVDRVDGVDIAAISAKSKKLAENASSAAATGQTLEE----RLKAL 125
            :|.|::|.:|||.:||.....|||:||.....::.|.::...:.|...:|.:.::|    |||.|
  Rat    78 VSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRHVSSGSFPPSTNEHVKEDLNLRLKKL 142

  Fly   126 INTAPLMIFMKGDRNGPRCGFSKQLIGIVNETNLPYETFDILGDEEVRQGLKTYSDWPTYPQVYV 190
            .:.||.|:||||....||||||||::.|:::.|:.:.:|||..||||||||||||:||||||:||
  Rat   143 THAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKTYSNWPTYPQLYV 207

  Fly   191 KGELIGGLDIIKELLANNELES 212
            .|||||||||||||.|:.||::
  Rat   208 SGELIGGLDIIKELEASEELDT 229

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6523NP_609641.1 TRX_PICOT 8..102 CDD:239282 36/96 (38%)
GRX_PICOT_like 122..211 CDD:239326 58/88 (66%)
Glrx3NP_116003.2 TRX_PICOT 20..115 CDD:239282 36/96 (38%)
GRX_PICOT_like 139..227 CDD:239326 57/87 (66%)
GRX_PICOT_like 241..329 CDD:239326
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166352998
Domainoid 1 1.000 100 1.000 Domainoid score I6847
eggNOG 1 0.900 - - E1_COG0278
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 193 1.000 Inparanoid score I3765
OMA 1 1.010 - - QHG53575
OrthoDB 1 1.010 - - D1449534at2759
OrthoFinder 1 1.000 - - FOG0003496
OrthoInspector 1 1.000 - - oto96102
orthoMCL 1 0.900 - - OOG6_101660
Panther 1 1.100 - - LDO PTHR10293
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2861
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.770

Return to query results.
Submit another query.