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Protein Alignment l(2)k05911 and Jon99Ciii

DIOPT Version :10

Sequence 1:	NP_723797.3	Gene:	l(2)k05911 / 34731	FlyBaseID:	FBgn0284244	Length:	639	Species:	Drosophila melanogaster
Sequence 2:	NP_733330.1	Gene:	Jon99Ciii / 43543	FlyBaseID:	FBgn0003357	Length:	265	Species:	Drosophila melanogaster

Alignment Length:	269	Identity:	88/269 - (32%)
Similarity:	138/269 - (51%)	Gaps:	25/269 - (9%)

- Green bases have known domain annotations that are detailed below.

  Fly   375 VSGTSSEGLPLQCGNKNPVTPDQERIVGGINASPHEFPWI-AVLFK-SGKQFCGGSLITNSHILT 437
            |:..::...|.|.....|:...|.||..|..|...:.|:| .:||. :|..:||||:|.|:.:||
  Fly    11 VAAATAVPAPAQKLTPTPIKDIQGRITNGYPAYEGKVPYIVGLLFSGNGNWWCGGSIIGNTWVLT 75

  Fly   438 AAHCVARMTSWDVAALTAHLGDYNIGTDFEVQH-VSRRIKRLVRHKGFEFSTLHNDVAILTLSEP 501
            ||||..     ..:.:|.:.| .:|.|..:..| |..  ..:::|..:....||||::::. :..
  Fly    76 AAHCTN-----GASGVTINYG-ASIRTQPQYTHWVGS--GDIIQHHHYNSGNLHNDISLIR-TPH 131

  Fly   502 VPFTREIQPICLPTSPSQQSRSYSGQVATVAGWGSLRENGPQPSILQKVDIPIWTNAECARKYGR 566
            |.|...:..:.|| |.:.:.:.|:|..|..:|||...:..|.|..||.||:.|.:.::|:|.:
  Fly   132 VDFWSLVNKVELP-SYNDRYQDYAGWWAVASGWGGTYDGSPLPDWLQSVDVQIISQSDCSRTW-- 193

  Fly   567 AAPGGIIESMICAG-QAAKDSCSGDSGGPMVINDGGRYTQVGIVSWG--IGCGKGQYPGVYTRVT 628
                .:.::|||.. ...|.:|.||||||:|.:||.|.  ||:.|:|  .||..|. |.|::|||
  Fly   194 ----SLHDNMICINTDGGKSTCGGDSGGPLVTHDGNRL--VGVTSFGSAAGCQSGA-PAVFSRVT 251

  Fly   629 SLLPWIYKN 637
            ..|.||..|
  Fly   252 GYLDWIRDN 260

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.