DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosalpha6T and psma4

DIOPT Version :9

Sequence 1:NP_609623.1 Gene:Prosalpha6T / 34726 FlyBaseID:FBgn0032492 Length:289 Species:Drosophila melanogaster
Sequence 2:NP_001007998.1 Gene:psma4 / 493360 XenbaseID:XB-GENE-5837209 Length:261 Species:Xenopus tropicalis


Alignment Length:251 Identity:74/251 - (29%)
Similarity:130/251 - (51%) Gaps:14/251 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 QYDNDTTTWSPQGRLFQVEYAMEAVKQGAATVGLKGTDYAVLAALCRTSK---DTNTLQRKIMPV 66
            :||:.||.:||:|||:||||||||:......:|:...|..:|||..|...   |......||..:
 Frog     4 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKL 68

  Fly    67 DDHVGMSIAGLTADARVVCQYMRTECMAYRHSYNAEFPVRRLVSNLGNKLQTTTQRYDRRPYGVG 131
            :|.:..|:||:|:||.|:...:|.....|...|....|..:||:.|.:..|..||...:||:||.
 Frog    69 NDDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVS 133

  Fly   132 LLVAGYDEQ-GPHIYQVMPTANVLNCKAMAIGSRSQSARTYLERNMESFEDCDMDELICHAIQAI 195
            ||..|:|:. |..:||..|:.|....||..||:.|.:|.:.|:::.:. .|..:...:..|::.:
 Frog   134 LLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE-GDMTLKSALALAVKVL 197

  Fly   196 RGSLGSDDVENLT---INVAIVGKD---VPFKMFTEAENQKYVKLVKAMDPPLEAD 245
            ..::   ||..|:   :.:|.:.::   ...::..:.|.::.:||.:..:..:|.:
 Frog   198 NKTM---DVSKLSAEKVEIATLTRENGKTKIRVLKQKEVEELIKLHEEEEAKIERE 250

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosalpha6TNP_609623.1 PRE1 4..233 CDD:223711 71/237 (30%)
proteasome_alpha_type_1 6..215 CDD:239718 70/215 (33%)
psma4NP_001007998.1 proteasome_alpha_type_4 3..216 CDD:239721 70/215 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1222564at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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