DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosalpha6T and psmb1

DIOPT Version :9

Sequence 1:NP_609623.1 Gene:Prosalpha6T / 34726 FlyBaseID:FBgn0032492 Length:289 Species:Drosophila melanogaster
Sequence 2:NP_001003889.1 Gene:psmb1 / 445413 ZFINID:ZDB-GENE-040618-2 Length:237 Species:Danio rerio


Alignment Length:211 Identity:50/211 - (23%)
Similarity:85/211 - (40%) Gaps:29/211 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 GAATVGLKGTDYAVLAALCRTSKDTNTLQR---KIMPVDDHVGMSIAGLTADARVVCQYMRTECM 93
            |...:.:.|.|:|::|:..|.|:..:...|   |...:.|...:..:|...|...:.:.:.....
Zfish    33 GGTVLAVAGEDFAIVASDTRLSEGYSIHSRDSPKCYKLTDTTVLGCSGFHGDCLTLTKIIEARLK 97

  Fly    94 AYRHSYNAEFPVRRLVSNLGNKLQTTTQRYDRR--PYGVGLLVAGYDEQG-PHIYQVMPTANVLN 155
            .|:||.|.......:.:.|      :|..|.||  ||.|..::.|.||:| ..:|...|..:...
Zfish    98 MYKHSNNKSMTSGAIAAML------STILYGRRFFPYYVYNIIGGLDEEGRGAVYSFDPVGSYQR 156

  Fly   156 CKAMAIGSRSQSARTYLE-----RNMESFEDCDMDELICHAIQAIRG---SLGSDDV-ENLTINV 211
            ....|.||.|...:..|:     :|||:.|...:.:.  .|:|.::.   |....|| ....:.|
Zfish   157 DTYKAGGSASAMLQPLLDNQIGFKNMENVEHVPLTQE--KAVQLVKDVFISAAERDVYTGDALKV 219

  Fly   212 AIVGKD------VPFK 221
            .||.|:      ||.:
Zfish   220 CIVSKEGIKEEIVPLR 235

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosalpha6TNP_609623.1 PRE1 4..233 CDD:223711 50/211 (24%)
proteasome_alpha_type_1 6..215 CDD:239718 46/197 (23%)
psmb1NP_001003889.1 PRE1 22..237 CDD:223711 50/211 (24%)
proteasome_beta_type_1 26..237 CDD:239726 50/211 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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