DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosalpha6T and Psmb10

DIOPT Version :9

Sequence 1:NP_609623.1 Gene:Prosalpha6T / 34726 FlyBaseID:FBgn0032492 Length:289 Species:Drosophila melanogaster
Sequence 2:NP_001020808.1 Gene:Psmb10 / 291983 RGDID:1307428 Length:273 Species:Rattus norvegicus


Alignment Length:232 Identity:62/232 - (26%)
Similarity:87/232 - (37%) Gaps:33/232 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 AVKQGAATVGLKGTDYAVLAALCRTSKDTNTLQR---KIMPVDDHVGMSIAGLTADARVVCQYMR 89
            |.|.|....||...|..:|.|..|.:.|:....:   ||..:...:....||:.||..     |.
  Rat    35 ARKTGTTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTE-----MT 94

  Fly    90 TECMAYRHSYNAEFPVRR-LVSNLGNKLQTTTQRYDRRPYGVGLLVAGYDEQGPHIYQVMPTANV 153
            |...|.:...:|....|. .|:.:...|:.|..||... .|..|:|.|.|..||.:|.|.|..:.
  Rat    95 TRMAASKMELHALSTGREPRVATVTRILRQTLFRYQGH-VGASLIVGGVDLNGPQLYSVHPHGSY 158

  Fly   154 LNCKAMAIGSRSQSARTYLERNMESFEDCD-MDELICHAIQA-IRGSLGSDDVENLTINVAIVGK 216
            ......|:||...:|...||...:.....: ..||:..||.| |.|.|||             |.
  Rat   159 SRLPFTALGSGQDAAVALLEDRFQPNMTLEAAQELLVEAITAGILGDLGS-------------GG 210

  Fly   217 DVPFKMFTEAENQKYVKLVKAMDPPLEADHDPLSEEG 253
            .|...:.|...    .||.:|:..|:|    |:...|
  Rat   211 SVDACVITAGG----AKLQRALSSPIE----PVQRAG 239

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosalpha6TNP_609623.1 PRE1 4..233 CDD:223711 55/210 (26%)
proteasome_alpha_type_1 6..215 CDD:239718 52/192 (27%)
Psmb10NP_001020808.1 proteasome_beta_type_7 40..226 CDD:239732 54/208 (26%)
Pr_beta_C 233..267 CDD:403609 3/11 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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