DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Prosalpha6T and Psmb3

DIOPT Version :9

Sequence 1:NP_609623.1 Gene:Prosalpha6T / 34726 FlyBaseID:FBgn0032492 Length:289 Species:Drosophila melanogaster
Sequence 2:NP_036101.1 Gene:Psmb3 / 26446 MGIID:1347014 Length:205 Species:Mus musculus


Alignment Length:201 Identity:47/201 - (23%)
Similarity:87/201 - (43%) Gaps:30/201 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 GAATVGLKGTDYAVLAALCR---TSKDTNTLQRKIMPVDDHVGMSIAGLTADARVVCQYMRTECM 93
            |.|.:.:||.:...:||..|   .::...|..:||.|:.|.:.:.:|||..|.:.|.|.::....
Mouse     8 GGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLN 72

  Fly    94 AYRHSYNAEFPVRRLVSNLGNKLQTTTQRYDRR--PYGVGLLVAGYDEQGPHIYQ-VMPTANVLN 155
            .|......:.....|:|.:.|.|      |::|  ||....::||.|   |..:: .:.:.:::.
Mouse    73 LYELKEGRQIKPYTLMSMVANLL------YEKRFGPYYTEPVIAGLD---PKTFKPFICSLDLIG 128

  Fly   156 CKAMA---IGSRSQSARTY------LERNMESFEDCDMDELICHAIQAIRGSLGSDDVENLTINV 211
            |..:.   :.|.:.|.:.|      .|.||      |.:.|.....||:..::..|.|..:.:.|
Mouse   129 CPMVTDDFVVSGTCSEQMYGMCESLWEPNM------DPEHLFETISQAMLNAVDRDAVSGMGVIV 187

  Fly   212 AIVGKD 217
            .::.||
Mouse   188 HVIEKD 193

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosalpha6TNP_609623.1 PRE1 4..233 CDD:223711 47/201 (23%)
proteasome_alpha_type_1 6..215 CDD:239718 45/197 (23%)
Psmb3NP_036101.1 proteasome_beta_type_3 6..201 CDD:239728 47/201 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.