DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ski6 and SKI6

DIOPT Version :9

Sequence 1:NP_001260437.1 Gene:Ski6 / 34721 FlyBaseID:FBgn0032487 Length:246 Species:Drosophila melanogaster
Sequence 2:NP_011711.3 Gene:SKI6 / 853109 SGDID:S000003427 Length:246 Species:Saccharomyces cerevisiae


Alignment Length:235 Identity:76/235 - (32%)
Similarity:134/235 - (57%) Gaps:8/235 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 KYDLLSEQGLRLDGRRPHELRRIKCKLGVF-EQPDGSAYMEQGNTKVLAAVYGPHQ----AKGNQ 63
            :.::.|.:||||||||.:||||.:..:... ...|||:||||||.|::..|.||.:    ::.:.
Yeast     3 RLEIYSPEGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDT 67

  Fly    64 TESVINCQYSQATFSTAER-KNRPRGDRKSLEFKLYLQQALSAAIKSELYPRSQIDIYVEVLQDD 127
            :::::|...:...||..|| |:..:.:|:.||.:..|.:.....:...:|||:.|||.:.||:.|
Yeast    68 SKALLNVSVNITKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLEQD 132

  Fly   128 GANYAVALNAATLALIDAGICLNEFIVACTASLSKSNIPLTDISQFEEVSGGPKLTVAALPTAEK 192
            |......:|..|||||||||.:.::|...:..|..:. ||.|.:..|| :....:|:..:..:||
Yeast   133 GGIMGSLINGITLALIDAGISMFDYISGISVGLYDTT-PLLDTNSLEE-NAMSTVTLGVVGKSEK 195

  Fly   193 IAFLEMSERFHIDHLETVIETAMAGCREIRDILEAAVKEH 232
            ::.|.:.::..:|.||.|:...:||...:||:::..:::|
Yeast   196 LSLLLVEDKIPLDRLENVLAIGIAGAHRVRDLMDEELRKH 235

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ski6NP_001260437.1 PRK03983 7..231 CDD:235187 75/229 (33%)
RNase_PH_RRP41 12..233 CDD:206775 75/227 (33%)
SKI6NP_011711.3 RNase_PH_RRP41 11..237 CDD:206775 75/227 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157344803
Domainoid 1 1.000 79 1.000 Domainoid score I2059
eggNOG 1 0.900 - - E1_COG0689
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6017
Inparanoid 1 1.050 132 1.000 Inparanoid score I1236
Isobase 1 0.950 - 0 Normalized mean entropy S936
OMA 1 1.010 - - QHG53663
OrthoFinder 1 1.000 - - FOG0001991
OrthoInspector 1 1.000 - - oto99456
orthoMCL 1 0.900 - - OOG6_101074
Panther 1 1.100 - - LDO PTHR11953
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1218
SonicParanoid 1 1.000 - - X3242
TreeFam 1 0.960 - -
1615.740

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