DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ski6 and Exosc4

DIOPT Version :9

Sequence 1:NP_001260437.1 Gene:Ski6 / 34721 FlyBaseID:FBgn0032487 Length:246 Species:Drosophila melanogaster
Sequence 2:NP_780608.1 Gene:Exosc4 / 109075 MGIID:1923576 Length:245 Species:Mus musculus


Alignment Length:238 Identity:127/238 - (53%)
Similarity:169/238 - (71%) Gaps:7/238 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSGKYDLLSEQGLRLDGRRPHELRRIKCKLGVFEQPDGSAYMEQGNTKVLAAVYGPHQAKGNQT- 64
            |:| .:|||:||.|:||||..|||:|:.::|||.|.|||||:||||||.||.|||||:.:|::: 
Mouse     1 MAG-LELLSDQGYRIDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRSR 64

  Fly    65 ----ESVINCQYSQATFSTAERKNRPRGDRKSLEFKLYLQQALSAAIKSELYPRSQIDIYVEVLQ 125
                .:::|||||.|||||.|||.||.|||||.|..|.|:|...|||.::|:|||||||||:|||
Mouse    65 ALPDRALVNCQYSSATFSTGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQ 129

  Fly   126 DDGANYAVALNAATLALIDAGICLNEFIVACTASLSKSNIPLTDISQFEEVSGGPKLTVAALPTA 190
            .||..||..:||||||::||||.:.:|:.||:|.. .....|.|:|..||.:|||:|.:|.||.:
Mouse   130 ADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGF-VDGTALADLSHVEEAAGGPQLALALLPAS 193

  Fly   191 EKIAFLEMSERFHIDHLETVIETAMAGCREIRDILEAAVKEHL 233
            .:||.|||..|.|.||||.|:|.|....|.:..:|:..|::|:
Mouse   194 GQIALLEMDSRLHEDHLEQVLEAAAQAARGVHTLLDLVVRQHV 236

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ski6NP_001260437.1 PRK03983 7..231 CDD:235187 124/228 (54%)
RNase_PH_RRP41 12..233 CDD:206775 120/225 (53%)
Exosc4NP_780608.1 RNase_PH_RRP41 11..237 CDD:206775 121/227 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167842487
Domainoid 1 1.000 166 1.000 Domainoid score I3877
eggNOG 1 0.900 - - E1_COG0689
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6017
Inparanoid 1 1.050 252 1.000 Inparanoid score I3196
Isobase 1 0.950 - 0 Normalized mean entropy S936
OMA 1 1.010 - - QHG53663
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001991
OrthoInspector 1 1.000 - - oto93145
orthoMCL 1 0.900 - - OOG6_101074
Panther 1 1.100 - - LDO PTHR11953
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1218
SonicParanoid 1 1.000 - - X3242
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1615.740

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