DRSC/TRiP Functional Genomics Resources

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Protein Alignment mRF1 and AT1G56350

DIOPT Version :9

Sequence 1:NP_609617.1 Gene:mRF1 / 34720 FlyBaseID:FBgn0032486 Length:392 Species:Drosophila melanogaster
Sequence 2:NP_176032.2 Gene:AT1G56350 / 842089 AraportID:AT1G56350 Length:482 Species:Arabidopsis thaliana


Alignment Length:403 Identity:123/403 - (30%)
Similarity:194/403 - (48%) Gaps:67/403 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 LARRWASTDPLSIQNE------------KLQAYLESLRQEYYAVRVNA----------------A 50
            :|.:|    |:..:||            .:|.....|:.:...||:..                |
plant   101 IANQW----PILDENEGDWKSHAAAIAQSIQVIKRRLQWKKLLVRLKVLSAELNKSDLWDDPTHA 161

  Fly    51 GN-SKSYARL-AQLEGVVSALEQRRVLERHITSAKDMEAEKDEDMRELMREENEVYVDLLGKQDQ 113
            |. |:.:..| .:::||::.  :|.:|| ||...|   ..|:|:..||..|..:..:|:.....:
plant   162 GKISREHGSLTGKMKGVMTF--ERELLE-HIDMLK---LAKEENDSELESETLKALIDMRRVSKE 220

  Fly   114 ALLQELLTLSDDEEYPALIF-GLNAGAGGQEAMLFAQELYEMYTGYFEHMGWEWEEFASEGTDIG 177
            ..|:.||:..:|   |...: .:.|||||.|:..:|..:.|||..:.:...:..........:|.
plant   221 KELEALLSADND---PCSCYIEVQAGAGGTESNDWAAMVMEMYKTWAQRRKFSVTVVDEAPGEIA 282

  Fly   178 GLRHASLMVSGEDAFRWLRYEAGVHRVQRVPATEKSGRMHTSTASITVIPRPAD--IQVHIAEKD 240
            |::.|::.|:||.|:.:.:.|.||||:.|:...:...|.|||.|::.|||...|  .:|.|.:.|
plant   283 GIKRATIKVNGEYAYGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPILGDGSTRVEINDSD 347

  Fly   241 LKIETKRASGAGGQHVNTTDSAVRIVHLPTGLAVEAQSERSQLKNRELAMKRLRSRLVQQQLESV 305
            |:||..|:.||||||.|||||||||||:|||:....|:||||..|:..||..|:|||  .|||..
plant   348 LRIERFRSGGAGGQHANTTDSAVRIVHIPTGITATCQNERSQHSNKASAMAVLQSRL--DQLEMA 410

  Fly   306 EASKMATKKAQQ------GSLNRNEKIRTYNFVQDRITDHRI-------QGGTLHNLNGFLKGGD 357
            ..:.|..:..|.      |:..|...:..|..|:|..|::.:       :|    :|:||:.  .
plant   411 RQTAMNAQHTQSLTEISWGNQIRTYVLHPYRMVKDLRTNYEVSDPDSVLEG----DLDGFIL--S 469

  Fly   358 QLSGLIEKLQLEH 370
            .||..::|...||
plant   470 FLSSSLDKDDPEH 482

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mRF1NP_609617.1 prfA 35..378 CDD:234801 117/370 (32%)
PCRF 58..222 CDD:281461 47/165 (28%)
RF-1 234..338 CDD:278876 49/109 (45%)
AT1G56350NP_176032.2 prfB 114..471 CDD:234799 113/373 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0216
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1313171at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
43.780

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