DRSC/TRiP Functional Genomics Resources

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Protein Alignment mRF1 and SPAC2F7.17

DIOPT Version :9

Sequence 1:NP_609617.1 Gene:mRF1 / 34720 FlyBaseID:FBgn0032486 Length:392 Species:Drosophila melanogaster
Sequence 2:NP_592987.1 Gene:SPAC2F7.17 / 2541478 PomBaseID:SPAC2F7.17 Length:396 Species:Schizosaccharomyces pombe


Alignment Length:358 Identity:137/358 - (38%)
Similarity:205/358 - (57%) Gaps:17/358 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 SIQNEKLQAYLESLRQEYYAVRVNAAGNSKSYA-RLAQLEGVVSALEQRRVLERHITSAKDMEA- 87
            |:.:|.||.:..:.:.:      :|..|....| |:|:|..|.:|..:.:.|...|:..|.||| 
pombe    43 SLSSEYLQFHQVNNKDQ------SAMTNDTDLAKRIARLRRVHNAYSKFKSLSEQISDLKQMEAQ 101

  Fly    88 EKDEDMREL-MREENEVYVDLLGKQDQALLQELLTLSDDEEYPALIFGLNAGAGGQEAMLFAQEL 151
            |.|.:::.: :.|.||: .:.:.|..:.|...||..:|....|||| .:..|.||.||.:||.||
pombe   102 ESDAEVKMMAVTEINEI-SNKIPKSIEDLENTLLPQADSYALPALI-EIRPGVGGTEAAIFANEL 164

  Fly   152 YEMYTGYFEHMGWEWEEFASEGTDIG--GLRHASLMVSGEDAFRWLRYEAGVHRVQRVPATEKSG 214
            .|||..|....||.. :|.|:....|  .:..|...:.||.|:..|..|.|||||||.||||..|
pombe   165 VEMYFQYANFKGWNC-KFISKSAVQGLEAITEAIFSIEGEGAYGHLMLEGGVHRVQRTPATETKG 228

  Fly   215 RMHTSTASITVIPRPADIQVH--IAEKDLKIETKRASGAGGQHVNTTDSAVRIVHLPTGLAVEAQ 277
            |:||||||:.|:|:.::.:..  ....::|||..|:.||||||||.|:||||:.|:|||:.|..|
pombe   229 RVHTSTASVIVLPQVSNDESSSLYDSSEVKIEVMRSRGAGGQHVNRTESAVRLTHIPTGITVSMQ 293

  Fly   278 SERSQLKNRELAMKRLRSRLVQQQLESVEASKMATKKAQQGSLNRNEKIRTYNFVQDRITDHRIQ 342
            ..|||.:|:|.|...|.|||..........::...:|.|..|.:|:||:|||||.|:|:||||| 
pombe   294 DSRSQHQNKEKAFLVLNSRLAALNAAKENEAERLKRKNQVTSSDRSEKLRTYNFNQNRVTDHRI- 357

  Fly   343 GGTLHNLNGFLKGGDQLSGLIEKLQLEHRRERL 375
            |.::|:|:.|::|.::....:||:::.:|.:.|
pombe   358 GLSMHDLSTFMQGEEKFDEFLEKIRIWNREQLL 390

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mRF1NP_609617.1 prfA 35..378 CDD:234801 133/348 (38%)
PCRF 58..222 CDD:281461 66/167 (40%)
RF-1 234..338 CDD:278876 46/105 (44%)
SPAC2F7.17NP_592987.1 PrfA 11..396 CDD:223294 137/358 (38%)
PCRF 66..237 CDD:281461 68/173 (39%)
RF-1 253..354 CDD:278876 46/100 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 101 1.000 Domainoid score I1789
eggNOG 1 0.900 - - E1_COG0216
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5905
Inparanoid 1 1.050 210 1.000 Inparanoid score I955
OMA 1 1.010 - - QHG62484
OrthoFinder 1 1.000 - - FOG0001423
OrthoInspector 1 1.000 - - oto101266
orthoMCL 1 0.900 - - OOG6_101033
Panther 1 1.100 - - LDO PTHR43804
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1085
SonicParanoid 1 1.000 - - X991
TreeFam 1 0.960 - -
1413.860

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