DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG9426 and AT5G28180

DIOPT Version :9

Sequence 1:NP_609616.1 Gene:CG9426 / 34719 FlyBaseID:FBgn0032485 Length:627 Species:Drosophila melanogaster
Sequence 2:NP_198170.1 Gene:AT5G28180 / 832894 AraportID:AT5G28180 Length:352 Species:Arabidopsis thaliana


Alignment Length:382 Identity:77/382 - (20%)
Similarity:130/382 - (34%) Gaps:131/382 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   198 NCESLAKSALNFVHANFPAVTLEDEFLETPQTLLSQLLNSELLRVDSESQVFQAALR-------- 254
            ||  ||:.:.::    :|.::|..:...|  .|:|..|....:::.:....|...|:        
plant    47 NC--LARISRSY----YPKLSLVCKTFRT--LLISNELTVARVQLKTYESFFHVCLKFPDKPNPS 103

  Fly   255 ----WIKHDVTQRRCYVFDVLSHVRMALVPVKVIDKAL-KDDCRDMSVKIALRSICRDIASKRGQ 314
                |||                      |.:::...| |::              |...:.|..
plant   104 MFTLWIK----------------------PGQILTNQLEKNE--------------RSTGATRLV 132

  Fly   315 LVPLRVC---PRQLAKKNIYIIGGSHRDTPRTWNSADCIFETVAKFDIFRREWTETAPMEVGRIL 376
            .:|...|   |..|......:.|.|..:.|    |::.....  |.|:|   |.....|.|.|..
plant   133 QIPSSYCSIVPHYLISVGSEVYGLSQHNDP----SSNMFVRN--KEDLF---WCNAPNMTVARAK 188

  Fly   377 PGVSALNGKIYVVGGERGSQILANGEVYDPQNDVWQPIAPMIVPRCEFGLCTMGGNLFAVGGWIG 441
            ....|.|||:||:||.|..:.:..|||:||:...|:.:.                          
plant   189 AIGHAYNGKLYVMGGCRDDESVNWGEVFDPKTQTWEALP-------------------------- 227

  Fly   442 DDIGGSMECYDPEQDLWKLMGSMPQPRFS--MGVVSFEGLIYIVGGCTTTTRHLPDLISFNPVTK 504
                      ||..:|          |||  ..:..|:..:|:      ::....|.: ::|...
plant   228 ----------DPGSEL----------RFSSIRKIDVFQEKLYV------SSNEKIDSV-YDPKEG 265

  Fly   505 EWNELARMQTARC-QMGVAVLDRYLYVVGGSSISQDILSSVERYSFDEDKWTTVCAL 560
            :|| :|.....:| .:|..:::...|  ||..:   ||......|.|:|.|..|.||
plant   266 KWN-VAEKSPVQCMNLGCGMIEIANY--GGKLL---ILWDKVGLSQDKDIWCAVIAL 316

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9426NP_609616.1 BTB 73..179 CDD:279045
PHA03098 78..558 CDD:222983 74/378 (20%)
BACK 187..289 CDD:285009 17/103 (17%)
Kelch 330..384 CDD:128874 12/53 (23%)
KELCH repeat 374..417 CDD:276965 16/42 (38%)
Kelch 385..431 CDD:128874 12/45 (27%)
KELCH repeat 421..465 CDD:276965 3/43 (7%)
Kelch <447..478 CDD:128874 7/32 (22%)
Kelch_6 467..516 CDD:290672 10/50 (20%)
KELCH repeat 468..512 CDD:276965 10/45 (22%)
Kelch_1 515..557 CDD:279660 11/42 (26%)
KELCH repeat 516..561 CDD:276965 14/46 (30%)
KELCH repeat 564..617 CDD:276965
Kelch 575..627 CDD:128874
AT5G28180NP_198170.1 F-box 36..78 CDD:279040 10/38 (26%)
KELCH repeat 186..231 CDD:276965 18/80 (23%)
Kelch_1 192..230 CDD:279660 16/73 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X9
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.