DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9426 and SKIP4

DIOPT Version :10

Sequence 1:NP_609616.1 Gene:CG9426 / 34719 FlyBaseID:FBgn0032485 Length:627 Species:Drosophila melanogaster
Sequence 2:NP_567112.1 Gene:SKIP4 / 825307 AraportID:AT3G61350 Length:358 Species:Arabidopsis thaliana


Alignment Length:412 Identity:84/412 - (20%)
Similarity:146/412 - (35%) Gaps:102/412 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   244 SESQVFQAALRWIKHDVTQR------RCYVFDVLSHVRMALVPVKVIDKALKDDCRDMSVKIALR 302
            :|:|:  |.:..:..|:::.      |.|      |:.|..|..:..|....|:..|...:..|.
plant    15 NETQI--ALISGVPDDISKSCLARVPREY------HMAMKCVSRRWRDFVCSDEMCDYRNEFNLA 71

  Fly   303 -----SICRDIASKRGQLVPLRVCPRQLAKKNIYIIGGSHRDTPRTWNSADCIFETVAKFDIFRR 362
                 ::||||:                        ||........::|              ||
plant    72 ESWIYALCRDIS------------------------GGVFLHMLNPFSS--------------RR 98

  Fly   363 EWTET-----APMEVGRILPGVSALNGKIYVVGGERGSQILANGEV--YDPQNDVW-QPIAPMIV 419
            .|...     .||..|.   |.:.|..:::|:|| .|....|..|:  ||...:.| ..:.|:..
plant    99 SWKRINDYPYIPMREGM---GFAVLGKRLFVLGG-CGWLEDATDEIYCYDAAMNTWFDVVPPLST 159

  Fly   420 PRCEFGLCTMGGNLFAVGG-WIGDDIGGSMECYDPEQDLWKL---MGSMPQPRFSMGVVSFEGLI 480
            .||.|...|:.|.:.|:|| .:..:...:.:.|||.....|.   :..:|:...|.   ..:|.|
plant   160 KRCYFACETLDGKIIAIGGLGLNPNAKRTWDIYDPLTRTCKSCSDVNIVPEMEDSF---VMDGRI 221

  Fly   481 YI---VGGCTTTTRHLPDLISFNPVTKEWNELARMQTARCQMGVAVLDRYLYVVGGSSISQDILS 542
            ||   |||.:|..        ::..:..|..:.....:..:....|:...|||     :.|...:
plant   222 YIRGGVGGSSTAV--------YSASSGIWERMDDDMASGWRGPAVVVAGDLYV-----LDQTFGA 273

  Fly   543 SVERYSFDEDKWTTVCALN--VPRAIPAVVAADGLLYVAGGDQPC-----EVNFYRAQVTINAVE 600
            .:..:..|...|..:..|:  |.:....:|:....::|.|.|  |     :|...|.. .:|.|.
plant   274 KLTMWCKDTRMWIHIGKLSQLVMKQPCRLVSIGNSIFVIGKD--CSTVVIDVENVRKN-KMNGVM 335

  Fly   601 CYDPLSDTWKNCPDLPVSRSEA 622
            ....:..||.:..|:...:|.|
plant   336 VCSSIPKTWDDDIDVISCKSVA 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9426NP_609616.1 BTB_POZ_KLHL27_IPP 63..189 CDD:349565
PHA03098 78..558 CDD:222983 68/339 (20%)
KELCH repeat 374..417 CDD:276965 11/45 (24%)
KELCH repeat 421..465 CDD:276965 12/47 (26%)
KELCH repeat 468..512 CDD:276965 10/46 (22%)
KELCH repeat 516..561 CDD:276965 7/44 (16%)
KELCH repeat 564..617 CDD:276965 12/57 (21%)
Kelch 575..627 CDD:128874 13/53 (25%)
SKIP4NP_567112.1 F-box_AtAFR-like 21..65 CDD:438923 9/49 (18%)
NanM 88..313 CDD:442289 53/258 (21%)
KELCH repeat 112..157 CDD:276965 12/48 (25%)
KELCH repeat 161..212 CDD:276965 13/50 (26%)
Blue background indicates that the domain is not in the aligned region.

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