DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9426 and SKIP6

DIOPT Version :9

Sequence 1:NP_609616.1 Gene:CG9426 / 34719 FlyBaseID:FBgn0032485 Length:627 Species:Drosophila melanogaster
Sequence 2:NP_565522.1 Gene:SKIP6 / 816731 AraportID:AT2G21950 Length:372 Species:Arabidopsis thaliana


Alignment Length:246 Identity:63/246 - (25%)
Similarity:102/246 - (41%) Gaps:58/246 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   302 RSICRDIASKRGQLVPLRVCPRQ--------LAKKNIYIIGGSHRDTPRT--WNSADCIFETVAK 356
            |::.....||  .|||:..||..        :....||:||||.||.|.:  | ..||.|.|   
plant    94 RTLSNSTNSK--MLVPIPSCPSPSLVGSAYVVVDSEIYVIGGSIRDVPSSSVW-VLDCRFHT--- 152

  Fly   357 FDIFRREWTETAPMEVGRILPGVSALNGKIYVVGG---ERGSQILANGEVYDPQNDVWQPIAPMI 418
                   |...:.|.|||.......::|||||:||   :..::.:...|::|.:...|:|:|.  
plant   153 -------WRRVSNMRVGREFAAAGVIDGKIYVIGGCVVDNWARSINWAEMFDIKTQTWEPVAS-- 208

  Fly   419 VPRCE------FGLCTMGGNLFAVGGWIGDDIGGSMECYDPEQDLWKLMGSMPQPRFSMGVVSFE 477
             |..|      .....|.|.::|:.     |..|.:  |:|::..|:    ||:.|..:|   :.
plant   209 -PGMEVREKWMHASAVMEGKVYAMA-----DRNGVV--YEPKEKKWE----MPEKRLDLG---WR 258

  Fly   478 GLIYIVGGCTTTTRHLPDLISFNPVTKEWNELARMQTARCQMGVAVLDRYL 528
            |...::........:|..:..::|..:.|.||         .||..|.::|
plant   259 GRACVIENILYCYDYLGKIRGYDPKERIWREL---------KGVESLPKFL 300

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9426NP_609616.1 BTB 73..179 CDD:279045
PHA03098 78..558 CDD:222983 63/246 (26%)
BACK 187..289 CDD:285009
Kelch 330..384 CDD:128874 19/55 (35%)
KELCH repeat 374..417 CDD:276965 13/45 (29%)
Kelch 385..431 CDD:128874 14/54 (26%)
KELCH repeat 421..465 CDD:276965 9/49 (18%)
Kelch <447..478 CDD:128874 7/30 (23%)
Kelch_6 467..516 CDD:290672 8/48 (17%)
KELCH repeat 468..512 CDD:276965 8/43 (19%)
Kelch_1 515..557 CDD:279660 4/14 (29%)
KELCH repeat 516..561 CDD:276965 4/13 (31%)
KELCH repeat 564..617 CDD:276965
Kelch 575..627 CDD:128874
SKIP6NP_565522.1 F-box 21..64 CDD:279040
Kelch_1 117..160 CDD:279660 15/53 (28%)
KELCH repeat 122..159 CDD:276965 15/47 (32%)
muta_rot_YjhT 153..>352 CDD:274641 41/174 (24%)
KELCH repeat 163..212 CDD:276965 14/51 (27%)
Kelch_1 163..210 CDD:279660 13/49 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 57 1.000 Inparanoid score I2576
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X9
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.960

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