DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment kek4 and slit3

DIOPT Version :9

Sequence 1:NP_001260435.1 Gene:kek4 / 34718 FlyBaseID:FBgn0032484 Length:649 Species:Drosophila melanogaster
Sequence 2:NP_571811.3 Gene:slit3 / 80354 ZFINID:ZDB-GENE-010306-4 Length:1516 Species:Danio rerio


Alignment Length:623 Identity:140/623 - (22%)
Similarity:231/623 - (37%) Gaps:146/623 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 LLDC--GNCHCKWNSGKKTADCRNLSLSGVPEYLSPEVQVLDLSHNHIFYLEENAFLTTHLQNLQ 101
            ||.|  ..|..|.:......||:..:...||..:....:.|||..|:|..:.:..|  :.|:||:
Zfish    17 LLSCAVNGCPHKCSCSGSHVDCQGQAFKTVPRGIPRNAERLDLDRNNITRITKVDF--SGLKNLR 79

  Fly   102 KLLIRNGTLKYLNQRSFTQLQILIELDLSNNLLVDLLPNVFDCLSKVRAIFLNGNLLQALRHGVF 166
            .|.:.|..:..:.:.:|..|:.|..:.|:.|.|..|...:|...:|:..:.|:.|.:||:....|
Zfish    80 VLHLENNQISVIERGAFEGLKQLERIRLNRNRLQVLPELLFQSTTKLSRLDLSENQIQAVPRKAF 144

  Fly   167 RNLKYLHKIELKRNRLVSIDAKAFVGVPLLSQIYLDNNELTKLRVESFQDLTKLTALSLVENPWN 231
            |.:..:..::|..|.:..|:..||..:..|..:.|:||.:|.:.:.||..:.||..|.|..|..:
Zfish   145 RGITTVKNLQLDSNHISCIEDGAFRALRDLEILTLNNNNITLIPLSSFNHMPKLRTLRLHSNNLH 209

  Fly   232 CTCDLQMFRDFVIGMNLYTPPTSCHYPLQLRGRLWIEDQPEAFAC------KPKIVYP--TLSTS 288
            |.|.|....|::.......|.|.|..|..:||....:.|...|.|      :|:...|  |:..:
Zfish   210 CDCHLSWLSDWLRQRRGLAPFTQCMAPAHMRGLNVPDVQKREFVCTGPVETEPRSCAPQVTICPA 274

  Fly   289 INTSKENVTLICRVHGSPNTVIAWDYTNQVYESR--SKPVKSLQKQRI--YIELLREDESK--IR 347
            ..|...|: :.||..|.  |.|..:....:.|.|  ...:|::.....  |.:|.|.|.||  |.
Zfish   275 ACTCNNNI-VDCRRKGL--TEIPANLPEGIVEIRLEQNMIKNIPAGAFSTYKKLKRIDLSKNQIS 336

  Fly   348 KFGHDVF--VSRLT--IVNARKSDEGVYTCLAENPGGKDSVHISVVVQKDMERISLIDSNFFAIV 408
            :...|.|  :..||  ::...|        :||.|.|                  |.|       
Zfish   337 EIAEDAFSGLRSLTSLVLYGNK--------IAEIPKG------------------LFD------- 368

  Fly   409 CLIAMGFLSMSILF---SLVTCLIFKRFKQFHPGQHTYLQPTSLPVQSPGSEEATAISALSSGVI 470
                 |.:|:.:|.   :.:.||....||.        ||..:|            :|...:.:.
Zfish   369 -----GLVSLQLLLLNANKINCLRVNTFKD--------LQNLNL------------LSLYDNKLQ 408

  Fly   471 RESKIVLDPLSAINEPSNKNYTLFKTSN---------------------SNGSEYMHTRNYKDVR 514
            ..||.:..||.||.       ||....|                     ::|:...|.|...:.|
Zfish   409 TISKGLFAPLRAIK-------TLHLAQNPFMCDCHLKWLADYLFDNPIETSGARCSHPRRLANKR 466

  Fly   515 LNSNTYTENLDNQAESISSR-NRELYSN-IAGDREKEELKQKD----ELDK-------------- 559
            ::.....:.....||...|| :.|.:.: :..:|.:.|....|    :|.|              
Zfish   467 ISQVKGKKFRCTGAEDYRSRLSGECFQDLVCPERCRCEGTVVDCSNLKLTKIPPHLPEHTTDLRL 531

  Fly   560 -DSRQSSLQSTGCSRKKGQIDELQPDLLPSTQPTALKN 596
             |:..|.|::||..:|           ||:.:...|.|
Zfish   532 NDNEISILEATGAFKK-----------LPNLRKINLSN 558

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kek4NP_001260435.1 leucine-rich repeat 75..99 CDD:275380 7/23 (30%)
LRR_8 99..158 CDD:290566 15/58 (26%)
leucine-rich repeat 100..123 CDD:275380 5/22 (23%)
leucine-rich repeat 124..147 CDD:275380 6/22 (27%)
LRR_8 146..206 CDD:290566 16/59 (27%)
leucine-rich repeat 148..171 CDD:275380 6/22 (27%)
leucine-rich repeat 172..195 CDD:275380 5/22 (23%)
leucine-rich repeat 196..219 CDD:275380 7/22 (32%)
TPKR_C2 228..277 CDD:301599 14/54 (26%)
IG_like 294..390 CDD:214653 25/105 (24%)
Ig 296..387 CDD:143165 24/100 (24%)
slit3NP_571811.3 LRRNT 24..55 CDD:214470 6/30 (20%)
LRR_8 52..112 CDD:290566 16/61 (26%)
LRR_4 55..92 CDD:289563 11/38 (29%)
leucine-rich repeat 55..77 CDD:275380 7/23 (30%)
LRR_RI <78..211 CDD:238064 35/132 (27%)
leucine-rich repeat 78..101 CDD:275380 5/22 (23%)
leucine-rich repeat 102..125 CDD:275380 6/22 (27%)
leucine-rich repeat 126..149 CDD:275380 6/22 (27%)
LRR_8 148..208 CDD:290566 17/59 (29%)
leucine-rich repeat 150..173 CDD:275380 5/22 (23%)
leucine-rich repeat 174..197 CDD:275380 7/22 (32%)
leucine-rich repeat 198..301 CDD:275380 27/105 (26%)
TPKR_C2 206..255 CDD:301599 13/48 (27%)
LRRNT 271..303 CDD:214470 7/34 (21%)
LRR_8 303..359 CDD:290566 15/63 (24%)
leucine-rich repeat 303..324 CDD:275380 4/20 (20%)
LRR_4 323..363 CDD:289563 13/47 (28%)
leucine-rich repeat 325..348 CDD:275380 8/22 (36%)
leucine-rich repeat 349..369 CDD:275380 9/57 (16%)
leucine-rich repeat 373..393 CDD:275380 4/19 (21%)
LRR_8 379..431 CDD:290566 17/78 (22%)
leucine-rich repeat 397..420 CDD:275380 6/34 (18%)
leucine-rich repeat 421..476 CDD:275380 8/61 (13%)
TPKR_C2 429..>459 CDD:301599 2/29 (7%)
LRRNT 497..527 CDD:214470 5/29 (17%)
leucine-rich repeat 506..528 CDD:275380 3/21 (14%)
LRR_4 527..566 CDD:289563 10/43 (23%)
leucine-rich repeat 529..550 CDD:275380 7/31 (23%)
LRR_8 549..609 CDD:290566 3/10 (30%)
leucine-rich repeat 551..574 CDD:275380 2/8 (25%)
leucine-rich repeat 575..598 CDD:275380
LRR_8 598..656 CDD:290566
leucine-rich repeat 599..622 CDD:275380
leucine-rich repeat 623..646 CDD:275380
leucine-rich repeat 647..769 CDD:275380
LRRCT 655..704 CDD:214507
LRRNT 718..749 CDD:214470
leucine-rich repeat 727..746 CDD:275378
LRR_4 748..787 CDD:289563
LRR_8 768..828 CDD:290566
LRR_4 768..808 CDD:289563
leucine-rich repeat 770..793 CDD:275380
leucine-rich repeat 794..817 CDD:275380
LRR_TYP 815..838 CDD:197687
leucine-rich repeat 818..839 CDD:275380
LRRCT 850..899 CDD:214507
EGF_CA <917..946 CDD:238011
EGF_CA 949..987 CDD:238011
EGF_CA 991..1025 CDD:238011
EGF_CA 1028..1065 CDD:238011
EGF_CA 1067..1103 CDD:238011
Laminin_G_2 1182..1305 CDD:280389
GHB_like <1457..1512 CDD:304424
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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