DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment kek4 and Lrrc4c

DIOPT Version :9

Sequence 1:NP_001260435.1 Gene:kek4 / 34718 FlyBaseID:FBgn0032484 Length:649 Species:Drosophila melanogaster
Sequence 2:NP_001276671.1 Gene:Lrrc4c / 241568 MGIID:2442636 Length:640 Species:Mus musculus


Alignment Length:672 Identity:146/672 - (21%)
Similarity:240/672 - (35%) Gaps:204/672 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 FDPCSISLKHLSLFLFKIYCLALIFRSASADWLLDCGNCHCKWNSGKKTADCRNLSLSGVPEYLS 71
            |||..:.|..|.|.:     :|.:.|:.:...:..|.|...|       ..|...:|..||:.:|
Mouse    23 FDPLLVVLLALQLLV-----VAGLVRAQTCPSVCSCSNQFSK-------VICVRKNLREVPDGIS 75

  Fly    72 P------------------------EVQVLDLSHNHIFYLEENAF---------------LTT-- 95
            .                        .:::|.||.|||..:|..||               |||  
Mouse    76 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP 140

  Fly    96 -----HLQNLQKLLIRNGTLKYLNQRSFTQLQILIELD-----------------LSNNLLVDL- 137
                 :|..|::|.:||..::.:...:|.::..|..||                 |||...::| 
Mouse   141 NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 205

  Fly   138 ------LPNVFDCLSKVRAIFLNGNLLQALRHGVFRNLKYLHKIELKRNRLVSIDAKAFVGVPLL 196
                  :||:.. |.|:..:.|:||.|.|:|.|.|:.|.:|.|:.:.::::..|:..||..:..|
Mouse   206 MCNLREIPNLTP-LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSL 269

  Fly   197 SQIYLDNNELTKLRVESFQDLTKLTALSLVENPWNCTCDLQMFRDFVIGMNLYTPPTS-----CH 256
            .:|.|.:|.||.|..:.|..|..|..:.|..|||||.||:.....::..|   .|..:     |:
Mouse   270 VEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIRDM---APSNTACCARCN 331

  Fly   257 YPLQLRGRLWIEDQPEAFAC-KPKIVYPTLSTSINTSKENVTLICRVHGSPNTVIAWDYTNQVYE 320
            .|..|:||...|.....|.| .|.||.|....:: |......|.||...| .|.::|...|..  
Mouse   332 TPPNLKGRYIGELDQNYFTCYAPVIVEPPADLNV-TEGMAAELKCRASTS-LTSVSWITPNGT-- 392

  Fly   321 SRSKPVKSLQKQRIYIELLREDESKIRKFGHDVFVSRLTIVNARKSDEGVYTCLAENPGGKDSV- 384
                 |.:....::.|.:|.:              ..|...|....|.|:|||:..|..|..:. 
Mouse   393 -----VMTHGAYKVRIAVLSD--------------GTLNFTNVTVQDTGMYTCMVSNSVGNTTAS 438

  Fly   385 --------------HISVVVQKDME----RISLIDSNF--------------------------- 404
                          :.|.|..:.||    .....|:|.                           
Mouse   439 ATLNVTAATTTPFSYFSTVTVETMEPSQDEARTTDNNVGPTPVIDWETTNVTTSLTPQSTRSTEK 503

  Fly   405 -FAI-----------------VCLIAMG-FLSMSILFSLVTCLIFKRFKQFHPGQHTYLQPTSLP 450
             |.|                 ...|.:| |::::::.:::..:.:|..||.|...|.  .||...
Mouse   504 TFTIPVTDINSGIPGIDEVMKTTKIIIGCFVAITLMAAVMLVIFYKMRKQHHRQNHH--APTRTV 566

  Fly   451 VQSPGSEEATAISALSSGVIRESKIVLDPLSAINEPSNKNYTLFK-----TSNSNGSEYMHTRNY 510
            ......:|.|..:.:.|.:         |:.||......:|..:|     |:..|....:|:..:
Mouse   567 EIINVDDEITGDTPMESHL---------PMPAIEHEHLNHYNSYKSPFNHTTTVNTINSIHSSVH 622

  Fly   511 KD--VRLNSNTYTENLDNQAES 530
            :.  :|:||.      ||..|:
Mouse   623 EPLLIRMNSK------DNVQET 638

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kek4NP_001260435.1 leucine-rich repeat 75..99 CDD:275380 13/45 (29%)
LRR_8 99..158 CDD:290566 19/82 (23%)
leucine-rich repeat 100..123 CDD:275380 5/22 (23%)
leucine-rich repeat 124..147 CDD:275380 10/46 (22%)
LRR_8 146..206 CDD:290566 19/59 (32%)
leucine-rich repeat 148..171 CDD:275380 9/22 (41%)
leucine-rich repeat 172..195 CDD:275380 5/22 (23%)
leucine-rich repeat 196..219 CDD:275380 9/22 (41%)
TPKR_C2 228..277 CDD:301599 17/54 (31%)
IG_like 294..390 CDD:214653 20/110 (18%)
Ig 296..387 CDD:143165 19/105 (18%)
Lrrc4cNP_001276671.1 LRRNT 47..80 CDD:214470 8/39 (21%)
PPP1R42 65..235 CDD:411060 38/170 (22%)
LRR 1 77..98 0/20 (0%)
leucine-rich repeat 78..101 CDD:275380 0/22 (0%)
LRR 2 101..122 9/20 (45%)
leucine-rich repeat 102..125 CDD:275380 9/22 (41%)
LRR 3 125..146 3/20 (15%)
leucine-rich repeat 126..149 CDD:275380 4/22 (18%)
LRR 4 149..170 5/20 (25%)
leucine-rich repeat 150..173 CDD:275380 5/22 (23%)
LRR 5 173..195 3/21 (14%)
leucine-rich repeat 174..198 CDD:275380 4/23 (17%)
LRR 6 198..219 4/21 (19%)
leucine-rich repeat 199..220 CDD:275380 4/21 (19%)
LRR_8 220..279 CDD:404697 19/58 (33%)
LRR 7 220..241 9/20 (45%)
leucine-rich repeat 221..244 CDD:275380 9/22 (41%)
LRR 8 244..265 5/20 (25%)
leucine-rich repeat 245..268 CDD:275380 5/22 (23%)
LRR_8 267..>301 CDD:404697 11/33 (33%)
LRR 9 268..289 8/20 (40%)
leucine-rich repeat 269..290 CDD:275380 8/20 (40%)
LRRCT 301..>339 CDD:214507 12/40 (30%)
IG 360..443 CDD:214652 20/105 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 463..482 3/18 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm8825
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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