DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Edem2 and EDEM1

DIOPT Version :9

Sequence 1:NP_609611.1 Gene:Edem2 / 34714 FlyBaseID:FBgn0032480 Length:801 Species:Drosophila melanogaster
Sequence 2:NP_055489.1 Gene:EDEM1 / 9695 HGNCID:18967 Length:657 Species:Homo sapiens


Alignment Length:488 Identity:214/488 - (43%)
Similarity:299/488 - (61%) Gaps:47/488 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 RAELREEARDMFYHAYNAYMQNAYPADELMPLSCKGRYRGVTPSRGD-----MDDILGNFSMTLV 106
            ||::|:.||.||...|:.||.:|:|.|||.|:.|:||    .|.|||     ::|:|||:|:|||
Human   127 RAQMRDLARGMFVFGYDNYMAHAFPQDELNPIHCRGR----GPDRGDPSNLNINDVLGNYSLTLV 187

  Fly   107 DTLDTLVLLGDFTEFDHAVKLVIRDVQFDSDIIVSVFETNIRMVGGLLSAH-ILAEYLQKHAD-T 169
            |.||||.::|:.:||..||||||..|.||.|..|.|||..||::|.||||| |:.:..|...| |
Human   188 DALDTLAIMGNSSEFQKAVKLVINTVSFDKDSTVQVFEATIRVLGSLLSAHRIITDSKQPFGDMT 252

  Fly   170 MHWYKGELLEMSRELGYRLLPAF-NTSTGIPHARVNLRLGMKDPMLKKSRETCTACAGTILLEFA 233
            :..|..|||.|:.:|..|||||| ||.||||:.||||:.|:..   ..:.|||||.||::|:||.
Human   253 IKDYDNELLYMAHDLAVRLLPAFENTKTGIPYPRVNLKTGVPP---DTNNETCTAGAGSLLVEFG 314

  Fly   234 ALSRLTGDPIFEVRAHAAMDALWKLRHRGSDLMGTVLNVHSGDWVRRDSGVGAGIDSYYEYLFKS 298
            .||||.||..||..|..|:.|||.||...:.|:|.|:|:.:|.||.:.||:|||:||:||||.||
Human   315 ILSRLLGDSTFEWVARRAVKALWNLRSNDTGLLGNVVNIQTGHWVGKQSGLGAGLDSFYEYLLKS 379

  Fly   299 YVLLGDDKYLARFNRHYNAVMKYVSEG-----------PMLLDVLMHRPHAKSKNFMDSLLAFWP 352
            |:|.|:.:.|..||..|.::..|:..|           |:.::|.|......: .::|||.||:|
Human   380 YILFGEKEDLEMFNAAYQSIQNYLRRGREACNEGEGDPPLYVNVNMFSGQLMN-TWIDSLQAFFP 443

  Fly   353 GLQVLSGDLKPAVQTHEMLYQVMQMHTFIPEAFTVDFQIHWGQ---HPLRPEFIESTYFLYRATG 414
            |||||.||::.|:..|...|.:.:.:..:||.:  ::|:....   :|||||.:||||.||:||.
Human   444 GLQVLIGDVEDAICLHAFYYAIWKRYGALPERY--NWQLQAPDVLFYPLRPELVESTYLLYQATK 506

  Fly   415 DHHYLQVGKKALKTLQQHAKVSCGYAAVNDVRTGKHEDRMDSFVLSETIKYLFLLFSDPQDLIIN 479
            :..||.||...|::|:::.||.||||.::.|.....||||:||.||||.|||:|||.:...:..:
Human   507 NPFYLHVGMDILQSLEKYTKVKCGYATLHHVIDKSTEDRMESFFLSETCKYLYLLFDEDNPVHKS 571

  Fly   480 VDEFVFTTEAHLLPLSIAQLGNATFSFRQTDEH 512
            ...::||||.|::               ..|||
Human   572 GTRYMFTTEGHIV---------------SVDEH 589

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Edem2NP_609611.1 Glyco_hydro_47 57..494 CDD:279825 206/458 (45%)
PA_EDEM3_like 645..770 CDD:239041
EDEM1NP_055489.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 48..94
Glyco_hydro_47 137..582 CDD:279825 205/454 (45%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D253774at33208
OrthoFinder 1 1.000 - - FOG0000713
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R726
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
43.950

Return to query results.
Submit another query.