DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Edem2 and edem2

DIOPT Version :9

Sequence 1:NP_609611.1 Gene:Edem2 / 34714 FlyBaseID:FBgn0032480 Length:801 Species:Drosophila melanogaster
Sequence 2:NP_001005031.1 Gene:edem2 / 448548 XenbaseID:XB-GENE-941890 Length:555 Species:Xenopus tropicalis


Alignment Length:549 Identity:205/549 - (37%)
Similarity:312/549 - (56%) Gaps:56/549 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 QNMSNKERAELREEARDMFYHAYNAYMQNAYPADELMPLSCKGRYRGVTPSRGDMDDILGNFSMT 104
            :.::.:|.|:.|:..:.|||||||.|:.:|:|.|||.||:|.|:            |..|:||:|
 Frog    25 RGLTEEEMAQYRDRVKSMFYHAYNNYLDHAFPYDELRPLTCDGQ------------DTWGSFSLT 77

  Fly   105 LVDTLDTLVLLGDFTEFDHAVKLVIRDVQFDSDIIVSVFETNIRMVGGLLSAHILAEYLQKHADT 169
            |:|.||||:::|:.|||...|.::...:.||.|:..||||||||:||||||||:.::......:.
 Frog    78 LIDALDTLLIIGNVTEFQRVVNVLQDTLDFDIDVNASVFETNIRVVGGLLSAHLFSKRAGLELEP 142

  Fly   170 MHWYKGELLEMSRELGYRLLPAFNTSTGIPHARVNLRLGMKDPMLKKSRETCTACAGTILLEFAA 234
            .....|.||.|:.|...:|||||:|:||:|:..|||..|:..   .::..||||..||.::|||.
 Frog   143 GWPCTGPLLRMAEEAARKLLPAFDTATGMPYGTVNLLRGVNP---TETPVTCTAGVGTFIVEFAT 204

  Fly   235 LSRLTGDPIFEVRAHAAMDALWKLRHRGSD--LMGTVLNVHSGDWVRRDSGVGAGIDSYYEYLFK 297
            ||||||||.||:.|..|:..||:.|   ||  |:|..::|.:..||.:|:|:|||:|||:|||.|
 Frog   205 LSRLTGDPQFEMVARRALRGLWESR---SDIGLVGNHVDVMTSKWVAQDAGIGAGVDSYFEYLVK 266

  Fly   298 SYVLLGDDKYLARFNRHYNAVMKYVSEGPMLLDVLMHRPHAKSKNFMDSLLAFWPGLQVLSGDLK 362
            ..:||.|::.::.|..:..|:..:.......:.|.|::.......| .||.|||||||.|.||::
 Frog   267 GAILLQDEELMSMFLEYNKALQNFTKYDDWYVWVQMYKGTVTMPVF-QSLEAFWPGLQSLVGDIR 330

  Fly   363 PAVQTHEMLYQVMQMHTFIPEAFTV--DFQIHWGQ-HPLRPEFIESTYFLYRATGDHHYLQVGKK 424
            ..:::....|.|.:....:||.:::  .|.:...: :|||||.|||..:||:||.|...|::|:.
 Frog   331 SGMRSFLNYYTVWRQFGGLPEFYSIPQGFTVEKREGYPLRPELIESAMYLYKATRDPILLELGRD 395

  Fly   425 ALKTLQQHAKVSCGYAAVNDVRTGKHEDRMDSFVLSETIKYLFLLFSDPQDLIIN---------- 479
            |::::::.:||.||:|.:.|||..|.::||:||.|:||||||:||| ||.:.|.|          
 Frog   396 AVESIERISKVDCGFATIKDVRDHKLDNRMESFFLAETIKYLYLLF-DPDNFIHNDGSTSDLVVT 459

  Fly   480 --------VDEFVFTTEAHLLPLSIAQLGNATFSFRQTDEHNVLDFMR--------TCPSSNRLF 528
                    ...:||.||||  |:..|.|......  ..::..|.|.:|        :.|.:.:..
 Frog   460 PYGECVMGAGGYVFNTEAH--PIDPAALHCCKRD--SAEQWEVEDLVREFFSIKSSSNPKAQQHR 520

  Fly   529 PE-KVRKPLRNFITGSCPRTTAGKRLSAL 556
            |: :.|...:.....|||......:||.|
 Frog   521 PDSQNRNKSKRTSKLSCPSQPFTSKLSIL 549

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Edem2NP_609611.1 Glyco_hydro_47 57..494 CDD:279825 187/459 (41%)
PA_EDEM3_like 645..770 CDD:239041
edem2NP_001005031.1 Glyco_hydro_47 42..480 CDD:366693 187/459 (41%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D253774at33208
OrthoFinder 1 1.000 - - FOG0000713
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

Return to query results.
Submit another query.