DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Edem2 and edem1

DIOPT Version :10

Sequence 1:NP_609611.1 Gene:Edem2 / 34714 FlyBaseID:FBgn0032480 Length:801 Species:Drosophila melanogaster
Sequence 2:NP_989397.2 Gene:edem1 / 395034 XenbaseID:XB-GENE-492908 Length:619 Species:Xenopus tropicalis


Alignment Length:530 Identity:225/530 - (42%)
Similarity:319/530 - (60%) Gaps:53/530 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 RAELREEARDMFYHAYNAYMQNAYPADELMPLSCKGRYRGVTPSRGD-----MDDILGNFSMTLV 106
            |.|:||.||.||...|::||:.|:|.|||.|:.|:||    .|..||     ::|:|||:|:||:
 Frog    92 RKEMREMARGMFSFGYDSYMKYAFPEDELNPILCRGR----GPDHGDPSNLNINDVLGNYSLTLI 152

  Fly   107 DTLDTLVLLGDFTEFDHAVKLVIRDVQFDSDIIVSVFETNIRMVGGLLSAH-ILAEYLQKHAD-T 169
            |.||||.::|:.|||..||:|||..|.||.:..|.|||..||::|.||||| ||.:..|...: |
 Frog   153 DALDTLAVMGNATEFHRAVRLVIDTVSFDKNSTVQVFEATIRILGSLLSAHIILTDSKQPFGNMT 217

  Fly   170 MHWYKGELLEMSRELGYRLLPAF-NTSTGIPHARVNLRLGMKDPMLKKSRETCTACAGTILLEFA 233
            :..|..|||.|:|:|..|||||| ||.||:|:.||||:.|:..   ....|||||.||::|:||.
 Frog   218 LSGYDNELLHMARDLAVRLLPAFENTKTGMPYPRVNLKKGVPP---DSRNETCTAGAGSLLVEFG 279

  Fly   234 ALSRLTGDPIFEVRAHAAMDALWKLRHRGSDLMGTVLNVHSGDWVRRDSGVGAGIDSYYEYLFKS 298
            .||||.||..||..|..|:.|||.||...:.|:|.|:|:.:|.||.:.||:|||:||::|||.||
 Frog   280 ILSRLLGDSTFEWVARRAVRALWSLRSNDTGLLGNVVNIQTGQWVGKQSGLGAGLDSFFEYLLKS 344

  Fly   299 YVLLGDDKYLARFNRHYNAVMKYVSEG-----------PMLLDVLMHRPHAKSKNFMDSLLAFWP 352
            ::|.|:::.|..||..|.::..::..|           |:.::|.|......: .::|||.||:|
 Frog   345 HILFGEEEDLEMFNEAYKSIQNHLRRGREACNEGEGDPPLYVNVNMLNGQLMN-TWIDSLQAFFP 408

  Fly   353 GLQVLSGDLKPAVQTHEMLYQVMQMHTFIPEAFT-------VDFQIHWGQHPLRPEFIESTYFLY 410
            |||||.||::.|:..|...|.:.:.:..:||.:.       |.|      :|||||.:||||.||
 Frog   409 GLQVLKGDIEDAICLHAFYYAIWKRYGALPERYNWQLQAPDVSF------YPLRPELVESTYLLY 467

  Fly   411 RATGDHHYLQVGKKALKTLQQHAKVSCGYAAVNDVRTGKHEDRMDSFVLSETIKYLFLLFSDPQD 475
            :||.:..||.||...|.:|::|||..||||.::.|.....||||:||.||||.|||:|||.:...
 Frog   468 QATKNPFYLHVGMDILLSLEKHAKAKCGYATLHHVVDKSQEDRMESFFLSETCKYLYLLFDEDNP 532

  Fly   476 LIINVDEFVFTTEAHLLPLSIAQLGNATF--------SFRQTDEHNVLDFMRTCPSSNRLF--PE 530
            |....::::||||.||:||. .:|.:.::        ..:||.|......:||..||...:  ||
 Frog   533 LHRVDNKYLFTTEGHLIPLD-PRLRDTSWQDIFHNKNKVQQTQEKLSQTKLRTANSSTNCYKVPE 596

  Fly   531 KVR--KPLRN 538
            :.|  .||::
 Frog   597 ERRFSLPLKS 606

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Edem2NP_609611.1 Glyco_hydro_47 57..494 CDD:460241 204/462 (44%)
PA_EDEM3_like 645..770 CDD:239041
edem1NP_989397.2 Glyco_hydro_47 102..551 CDD:460241 204/462 (44%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.