DRSC/TRiP Functional Genomics Resources

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Protein Alignment Edem2 and edem1

DIOPT Version :9

Sequence 1:NP_609611.1 Gene:Edem2 / 34714 FlyBaseID:FBgn0032480 Length:801 Species:Drosophila melanogaster
Sequence 2:NP_989397.2 Gene:edem1 / 395034 XenbaseID:XB-GENE-492908 Length:619 Species:Xenopus tropicalis


Alignment Length:530 Identity:225/530 - (42%)
Similarity:319/530 - (60%) Gaps:53/530 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 RAELREEARDMFYHAYNAYMQNAYPADELMPLSCKGRYRGVTPSRGD-----MDDILGNFSMTLV 106
            |.|:||.||.||...|::||:.|:|.|||.|:.|:||    .|..||     ::|:|||:|:||:
 Frog    92 RKEMREMARGMFSFGYDSYMKYAFPEDELNPILCRGR----GPDHGDPSNLNINDVLGNYSLTLI 152

  Fly   107 DTLDTLVLLGDFTEFDHAVKLVIRDVQFDSDIIVSVFETNIRMVGGLLSAH-ILAEYLQKHAD-T 169
            |.||||.::|:.|||..||:|||..|.||.:..|.|||..||::|.||||| ||.:..|...: |
 Frog   153 DALDTLAVMGNATEFHRAVRLVIDTVSFDKNSTVQVFEATIRILGSLLSAHIILTDSKQPFGNMT 217

  Fly   170 MHWYKGELLEMSRELGYRLLPAF-NTSTGIPHARVNLRLGMKDPMLKKSRETCTACAGTILLEFA 233
            :..|..|||.|:|:|..|||||| ||.||:|:.||||:.|:..   ....|||||.||::|:||.
 Frog   218 LSGYDNELLHMARDLAVRLLPAFENTKTGMPYPRVNLKKGVPP---DSRNETCTAGAGSLLVEFG 279

  Fly   234 ALSRLTGDPIFEVRAHAAMDALWKLRHRGSDLMGTVLNVHSGDWVRRDSGVGAGIDSYYEYLFKS 298
            .||||.||..||..|..|:.|||.||...:.|:|.|:|:.:|.||.:.||:|||:||::|||.||
 Frog   280 ILSRLLGDSTFEWVARRAVRALWSLRSNDTGLLGNVVNIQTGQWVGKQSGLGAGLDSFFEYLLKS 344

  Fly   299 YVLLGDDKYLARFNRHYNAVMKYVSEG-----------PMLLDVLMHRPHAKSKNFMDSLLAFWP 352
            ::|.|:::.|..||..|.::..::..|           |:.::|.|......: .::|||.||:|
 Frog   345 HILFGEEEDLEMFNEAYKSIQNHLRRGREACNEGEGDPPLYVNVNMLNGQLMN-TWIDSLQAFFP 408

  Fly   353 GLQVLSGDLKPAVQTHEMLYQVMQMHTFIPEAFT-------VDFQIHWGQHPLRPEFIESTYFLY 410
            |||||.||::.|:..|...|.:.:.:..:||.:.       |.|      :|||||.:||||.||
 Frog   409 GLQVLKGDIEDAICLHAFYYAIWKRYGALPERYNWQLQAPDVSF------YPLRPELVESTYLLY 467

  Fly   411 RATGDHHYLQVGKKALKTLQQHAKVSCGYAAVNDVRTGKHEDRMDSFVLSETIKYLFLLFSDPQD 475
            :||.:..||.||...|.:|::|||..||||.::.|.....||||:||.||||.|||:|||.:...
 Frog   468 QATKNPFYLHVGMDILLSLEKHAKAKCGYATLHHVVDKSQEDRMESFFLSETCKYLYLLFDEDNP 532

  Fly   476 LIINVDEFVFTTEAHLLPLSIAQLGNATF--------SFRQTDEHNVLDFMRTCPSSNRLF--PE 530
            |....::::||||.||:||. .:|.:.::        ..:||.|......:||..||...:  ||
 Frog   533 LHRVDNKYLFTTEGHLIPLD-PRLRDTSWQDIFHNKNKVQQTQEKLSQTKLRTANSSTNCYKVPE 596

  Fly   531 KVR--KPLRN 538
            :.|  .||::
 Frog   597 ERRFSLPLKS 606

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Edem2NP_609611.1 Glyco_hydro_47 57..494 CDD:279825 204/462 (44%)
PA_EDEM3_like 645..770 CDD:239041
edem1NP_989397.2 Glyco_hydro_47 102..551 CDD:366693 204/462 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D253774at33208
OrthoFinder 1 1.000 - - FOG0000713
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R726
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.950

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