DRSC/TRiP Functional Genomics Resources

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Protein Alignment Edem2 and edem1

DIOPT Version :9

Sequence 1:NP_609611.1 Gene:Edem2 / 34714 FlyBaseID:FBgn0032480 Length:801 Species:Drosophila melanogaster
Sequence 2:NP_957483.2 Gene:edem1 / 394164 ZFINID:ZDB-GENE-040426-808 Length:628 Species:Danio rerio


Alignment Length:547 Identity:228/547 - (41%)
Similarity:324/547 - (59%) Gaps:61/547 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 RAELREEARDMFYHAYNAYMQNAYPADELMPLSCKGRYRGV-TPSRGDMDDILGNFSMTLVDTLD 110
            :.::|..||||||..|:.||:.|:|.|||.|::|:||...| .||..:::|:|||:|:||:||||
Zfish   112 KVKMRAMARDMFYFGYDNYMKFAFPEDELNPIACEGRGPDVLNPSNININDVLGNYSLTLIDTLD 176

  Fly   111 TLVLLGDFTEFDHAVKLVIRDVQFDSDIIVSVFETNIRMVGGLLSAHILAEYLQKHADTMH---- 171
            ||::||:.|||..||||||..|.||.|..|.|||.|||::|.|:|||||.      .|..|    
Zfish   177 TLLVLGNVTEFHRAVKLVIDTVSFDKDSTVQVFEANIRILGSLISAHILL------TDPRHPFGD 235

  Fly   172 ----WYKGELLEMSRELGYRLLPAF-NTSTGIPHARVNLRLGMKDPMLKKSRETCTACAGTILLE 231
                .|..|||.::.:|..|||||| |||||||:.||||:.|:....:   .|||||.||::|:|
Zfish   236 VGLKDYDNELLHLAHDLAVRLLPAFENTSTGIPYPRVNLKNGVPPDSI---NETCTAGAGSLLVE 297

  Fly   232 FAALSRLTGDPIFEVRAHAAMDALWKLRHRGSDLMGTVLNVHSGDWVRRDSGVGAGIDSYYEYLF 296
            |..||||.||..||..|..|:.||||||...:.|:|.|:|:.:|.||.:.||:|||:||:||||.
Zfish   298 FGILSRLIGDSTFEWVARRAVKALWKLRSNETGLLGNVVNIQTGQWVGKQSGLGAGMDSFYEYLL 362

  Fly   297 KSYVLLGDDKYLARFNRHYNAVMKYVSEG-----------PMLLDVLMHRPHAKSKNFMDSLLAF 350
            |||:|.|:.:....|...|.::..::..|           |:.::|.|......: .::|||.||
Zfish   363 KSYILFGEKEDFRMFTAAYESIQSHLRRGREACNEGEGDPPLYVNVNMFNGQIMN-TWIDSLQAF 426

  Fly   351 WPGLQVLSGDLKPAVQTHEMLYQVMQMHTFIPEAFTVDFQIHWGQ---HPLRPEFIESTYFLYRA 412
            :||||||:||::.|:..|...|.:.:....:||.:  ::|:....   :|||||.:||||.||:|
Zfish   427 FPGLQVLNGDVENAICLHAFYYAIWKRFGALPERY--NWQLQAPDVLFYPLRPELVESTYLLYQA 489

  Fly   413 TGDHHYLQVGKKALKTLQQHAKVSCGYAAVNDVRTGKHEDRMDSFVLSETIKYLFLLFSDPQDLI 477
            |.:..||.||...|::|:::.||.||||.::.|.....||||:||.||||.|||:|||.:...|.
Zfish   490 TKNPFYLHVGMDILESLEKNTKVRCGYATLHHVVDKSKEDRMESFFLSETCKYLYLLFDEDNPLH 554

  Fly   478 INVDEFVFTTEAHLLPLSIAQLGNATFSFRQTDEHNVLDFMRTCPSSNRLFP-EKVRKPLRNFIT 541
            .:.::::||||.|::|:      :..|..|..:|.               || |:.||..|..|:
Zfish   555 KSENKYIFTTEGHVVPI------DQRFRERSWEEQ---------------FPNEEARKDPRANIS 598

  Fly   542 GSCPRTTAGKR--LSALDFQASNADHL 566
             :|.|....:|  |..........||:
Zfish   599 -NCDRIPEERRYGLPLKSMYMRQIDHM 624

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Edem2NP_609611.1 Glyco_hydro_47 57..494 CDD:279825 207/460 (45%)
PA_EDEM3_like 645..770 CDD:239041
edem1NP_957483.2 Glyco_hydro_47 122..571 CDD:279825 207/460 (45%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D253774at33208
OrthoFinder 1 1.000 - - FOG0000713
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R726
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.950

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