DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG16974 and si:ch211-237i5.4

DIOPT Version :9

Sequence 1:NP_001246018.1 Gene:CG16974 / 34713 FlyBaseID:FBgn0032479 Length:1257 Species:Drosophila melanogaster
Sequence 2:XP_001920877.1 Gene:si:ch211-237i5.4 / 557635 ZFINID:ZDB-GENE-131121-468 Length:346 Species:Danio rerio


Alignment Length:269 Identity:78/269 - (28%)
Similarity:113/269 - (42%) Gaps:63/269 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   327 VLDLSDNRLLSFPDNFFARNGQLRQLHLQRNQLKSIGKHSLYSLRELRQLDLSQNSLSVIDRKAF 391
            :|||..|||.......||....||.|.|..:.::::...:.:||..|.:||:|.|:|:.|.....
Zfish    54 LLDLGGNRLTEIRSRAFAGLWSLRILVLSDSNIQALQSQAFFSLSFLEKLDMSHNNLTQIPPNFS 118

  Fly   392 ESLDHLLALNVSGNNLTLLSSIIFQSLHALRQLDLSRNQFKQLPSGLFQRQRSLVLLRIDETPIE 456
            |||..|..|.:..|.|.||.....:.|..|.:||||.|..:.|..|.|:.               
Zfish   119 ESLSSLRELRLDHNALQLLKPPGLEHLENLAKLDLSHNHIQSLEPGAFRG--------------- 168

  Fly   457 QFSNWISRYDESLVDPQVLHRLRYLSVQQN-------RKLTYLPATLFANTPNIRELLLAENGLL 514
                              |.|||:|.:|.|       |.||.|||        :..|.|..|.:.
Zfish   169 ------------------LSRLRHLYLQGNHLDVIRDRSLTMLPA--------LEVLQLGNNNIS 207

  Fly   515 QLPTQISGLSRLQRLS---VRGNSLGSLPENIKELRQLH----YLNILGNEYQCDCSMYWLTAWL 572
            |:  :::.|:.|..||   :.||.|..|  |.|....|.    :|.:.||.:.|||.::.:.:.|
Zfish   208 QI--EVNALAPLHSLSLLGLEGNQLEHL--NFKTFLSLRTATTHLLLSGNPWSCDCDLHRVFSKL 268

  Fly   573 ANTSTSLRH 581
                .|:||
Zfish   269 ----LSVRH 273

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG16974NP_001246018.1 leucine-rich repeat 206..228 CDD:275380
leucine-rich repeat 229..252 CDD:275380
LRR_RI <246..433 CDD:238064 37/105 (35%)
LRR_8 251..311 CDD:290566
leucine-rich repeat 253..276 CDD:275380
leucine-rich repeat 277..300 CDD:275380
leucine-rich repeat 301..324 CDD:275380
LRR_8 325..383 CDD:290566 19/55 (35%)
leucine-rich repeat 325..348 CDD:275380 8/20 (40%)
leucine-rich repeat 349..372 CDD:275380 6/22 (27%)
LRR_RI 351..>557 CDD:238064 59/219 (27%)
LRR_8 371..431 CDD:290566 23/59 (39%)
leucine-rich repeat 373..396 CDD:275380 10/22 (45%)
leucine-rich repeat 397..420 CDD:275380 7/22 (32%)
leucine-rich repeat 421..444 CDD:275380 9/22 (41%)
LRR_8 477..536 CDD:290566 22/68 (32%)
leucine-rich repeat 478..502 CDD:275380 11/30 (37%)
leucine-rich repeat 503..526 CDD:275380 5/22 (23%)
Ig <714..761 CDD:299845
si:ch211-237i5.4XP_001920877.1 leucine-rich repeat 34..53 CDD:275380
leucine-rich repeat 54..75 CDD:275380 8/20 (40%)
LRR_RI <69..238 CDD:238064 61/213 (29%)
LRR_8 75..134 CDD:290566 19/58 (33%)
leucine-rich repeat 76..99 CDD:275380 6/22 (27%)
leucine-rich repeat 100..123 CDD:275380 10/22 (45%)
LRR_8 122..182 CDD:290566 23/92 (25%)
leucine-rich repeat 124..147 CDD:275380 7/22 (32%)
leucine-rich repeat 148..171 CDD:275380 10/55 (18%)
LRR_8 170..230 CDD:290566 22/69 (32%)
leucine-rich repeat 172..195 CDD:275380 9/22 (41%)
leucine-rich repeat 196..219 CDD:275380 6/24 (25%)
leucine-rich repeat 220..240 CDD:275380 8/21 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24366
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.010

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