DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG16974 and Lingo2

DIOPT Version :9

Sequence 1:NP_001246018.1 Gene:CG16974 / 34713 FlyBaseID:FBgn0032479 Length:1257 Species:Drosophila melanogaster
Sequence 2:NP_001159471.1 Gene:Lingo2 / 242384 MGIID:2442298 Length:606 Species:Mus musculus


Alignment Length:666 Identity:153/666 - (22%)
Similarity:243/666 - (36%) Gaps:163/666 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   211 AENRLECLH----WAIPLAVR-RVKVLEMSGNRLSNCSLLNLQYMKQLQELHLDRSELTYLPQRF 270
            |:|:....|    .|||..:. ..|:|::|.|||.:.:                       |:.|
Mouse    36 AQNKSVSCHRRRLLAIPEGIPIETKILDLSKNRLKSIN-----------------------PEEF 77

  Fly   271 LGELSELRMLNLSQNLLTELPRDIFVGALKLERLYLSGNRLSVLPFMLFQTAADLQVLDLSDNRL 335
            : ....|..::||.|::..:....|.....|..|.|.||||.::|..:|...::|..||:|:|::
Mouse    78 I-SYPLLEEIDLSDNIIANVEPGAFNNLFNLRSLRLKGNRLKLVPLGVFTGLSNLTKLDISENKI 141

  Fly   336 LSFPDNFFARNGQLRQLHLQRNQLKSIGKHSLYSLRELRQLDLSQNSLSVIDRKAFESLDHLLAL 400
            :...|..|.....|:.|.:..|.|..|...:...|..|.||.|.:.:|:.:..:|...|..|:||
Mouse   142 VILLDYMFQDLHNLKSLEVGDNDLVYISHRAFSGLLSLEQLTLEKCNLTAVPTEALSHLRSLIAL 206

  Fly   401 NVSGNNLTLLSSIIFQSLHALRQLDLSRNQFKQL-PS----GLFQRQRSLVLLRIDETPIEQFSN 460
            ::...|:..:....|:.|..|:.|::.......| |:    ||.....|:....:...|...|.:
Mouse   207 HLKHLNINNMPVYAFKRLFHLKNLEIDYWPLLDLMPANSLYGLNLTSLSITNTNLSTVPFLAFKH 271

  Fly   461 WISRYDESLVDPQVLHRLRYLSVQQNRKLTYLPATLFANTPNIRELLLAENGLLQL-PTQISGLS 524
                          |..|.:|::..| .::.:.|.:|::...::||.:....|..: |....||.
Mouse   272 --------------LVYLTHLNLSYN-PISTIEAGMFSDLIRLQELHIVGAQLRTIEPHSFQGLR 321

  Fly   525 RLQRLSVRGNSLGSLPENI-KELRQLHYLNILGNEYQCDCSMYWLTAWLANTSTSLRHQM---PQ 585
            .|:.|:|..|.|.:|.||: ...|.|..|:|..|...|||.:.||.....|.....:..|   |.
Mouse   322 FLRVLNVSQNLLETLEENVFSSPRALEVLSINNNPLACDCRLLWLLQRQPNLQFGGQQPMCAGPD 386

  Fly   586 A-QNHSNGSTNQTPLDSYESIDHQIDALKCQYGYRGDMLRVLSKLNCSVPTVVQFSEPKMHKLL- 648
            . :..|....:.|.|..|                          ..|..|.:   .|.|:..|| 
Mouse   387 TIRERSFKDFHSTALSFY--------------------------FTCKKPKI---REKKLQHLLV 422

  Fly   649 ---STAKLECQISGSPVPDIIWVTPRNKILRHHADPDKRPIIIDSKEDAHQPPSAQELAALMDES 710
               .|.:|||...|.|.|.|.|||||.:.:.                                  
Mouse   423 DEGQTVQLECNADGDPQPVISWVTPRRRFIT---------------------------------- 453

  Fly   711 YIQSLNWTRQNSLVGRRVVLVENGSLLVHNISRIDSGLYTCYAFNVMGK----ASAGLR------ 765
                   |:.|   ||..|| .:|:|.:......|||:|.|.|.|..|.    ||..::      
Mouse   454 -------TKSN---GRATVL-GDGTLEIRFAQDQDSGMYVCIASNAAGNDTFTASLTVKGFTSDR 507

  Fly   766 -LYIDPIVFYRVKIGSILFGTALATAFL--LLTLIVQGLRSCLSRWGICNRFYCCV--------- 818
             ||.:....|.......:.....|..|.  |.|::|.....|.:..|:.  .:|.:         
Mouse   508 FLYANRTPMYMTDSNDTVSNGTNANTFSLDLKTILVSTAMGCFTFLGVV--LFCFLLLFVWSRGK 570

  Fly   819 NRKKKS------PRKH 828
            .:.|.|      |||:
Mouse   571 GKHKNSIDLEYVPRKN 586

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG16974NP_001246018.1 leucine-rich repeat 206..228 CDD:275380 6/21 (29%)
leucine-rich repeat 229..252 CDD:275380 6/22 (27%)
LRR_RI <246..433 CDD:238064 44/186 (24%)
LRR_8 251..311 CDD:290566 12/59 (20%)
leucine-rich repeat 253..276 CDD:275380 2/22 (9%)
leucine-rich repeat 277..300 CDD:275380 5/22 (23%)
leucine-rich repeat 301..324 CDD:275380 9/22 (41%)
LRR_8 325..383 CDD:290566 17/57 (30%)
leucine-rich repeat 325..348 CDD:275380 7/22 (32%)
leucine-rich repeat 349..372 CDD:275380 6/22 (27%)
LRR_RI 351..>557 CDD:238064 51/212 (24%)
LRR_8 371..431 CDD:290566 15/59 (25%)
leucine-rich repeat 373..396 CDD:275380 7/22 (32%)
leucine-rich repeat 397..420 CDD:275380 6/22 (27%)
leucine-rich repeat 421..444 CDD:275380 6/27 (22%)
LRR_8 477..536 CDD:290566 15/59 (25%)
leucine-rich repeat 478..502 CDD:275380 5/23 (22%)
leucine-rich repeat 503..526 CDD:275380 6/23 (26%)
Ig <714..761 CDD:299845 16/50 (32%)
Lingo2NP_001159471.1 LRRNT 27..60 CDD:214470 6/23 (26%)
leucine-rich repeat 39..57 CDD:275380 4/17 (24%)
LRR 1 58..79 8/44 (18%)
leucine-rich repeat 59..82 CDD:275380 8/46 (17%)
LRR_8 60..117 CDD:404697 18/80 (23%)
LRR 2 82..103 5/20 (25%)
leucine-rich repeat 83..106 CDD:275380 5/22 (23%)
LRR_8 106..165 CDD:404697 19/58 (33%)
LRR 3 106..127 9/20 (45%)
leucine-rich repeat 107..130 CDD:275380 9/22 (41%)
LRR 4 130..151 7/20 (35%)
leucine-rich repeat 131..154 CDD:275380 7/22 (32%)
LRR 5 154..175 5/20 (25%)
leucine-rich repeat 155..178 CDD:275380 6/22 (27%)
PPP1R42 176..>373 CDD:411060 53/211 (25%)
LRR 6 178..199 6/20 (30%)
leucine-rich repeat 179..202 CDD:275380 7/22 (32%)
LRR 7 202..223 5/20 (25%)
leucine-rich repeat 203..250 CDD:275380 11/46 (24%)
LRR 8 226..247 4/20 (20%)
LRR 9 250..271 3/20 (15%)
leucine-rich repeat 251..274 CDD:275380 4/36 (11%)
LRR 10 274..295 5/21 (24%)
leucine-rich repeat 275..298 CDD:275380 5/23 (22%)
LRR 11 298..319 4/20 (20%)
leucine-rich repeat 299..322 CDD:275380 6/22 (27%)
LRR 12 322..343 8/20 (40%)
leucine-rich repeat 323..343 CDD:275380 8/19 (42%)
LRRCT 355..408 CDD:214507 13/78 (17%)
Ig 411..500 CDD:416386 35/136 (26%)
Ig strand A' 417..421 CDD:409353 0/3 (0%)
Ig strand B 427..436 CDD:409353 4/8 (50%)
Ig strand C 441..446 CDD:409353 2/4 (50%)
Ig strand C' 449..451 CDD:409353 0/1 (0%)
Ig strand D 460..463 CDD:409353 0/2 (0%)
Ig strand E 466..473 CDD:409353 2/6 (33%)
Ig strand F 479..487 CDD:409353 4/7 (57%)
Ig strand G 490..500 CDD:409353 3/9 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D195414at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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