DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG16974 and Lingo1

DIOPT Version :9

Sequence 1:NP_001246018.1 Gene:CG16974 / 34713 FlyBaseID:FBgn0032479 Length:1257 Species:Drosophila melanogaster
Sequence 2:XP_006511149.1 Gene:Lingo1 / 235402 MGIID:1915522 Length:647 Species:Mus musculus


Alignment Length:717 Identity:164/717 - (22%)
Similarity:252/717 - (35%) Gaps:176/717 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   181 WQSSELKDETLMELFTRQPRSF---EYMERL------NLAENRLECLHWAIPLAVRRVKVLEMSG 236
            |.:||.:         |.|||.   :..||:      ::....|.|....:.|.:..|    :||
Mouse    13 WCASEAE---------RYPRSVSLEQVSERMLAGGMRSMPSPLLACWQPILLLVLGSV----LSG 64

  Fly   237 NRLS-----NCSLLNLQYMKQLQELHLDRSELTYLPQRFL----GELSELRMLNLSQNLLTELPR 292
            :...     .||.             .||:.|.: .:||:    |..:|.|:|:|.:|.:..|.:
Mouse    65 SATGCPPRCECSA-------------QDRAVLCH-RKRFVAVPEGIPTETRLLDLGKNRIKTLNQ 115

  Fly   293 DIFVGALKLERLYLSGNRLSVLPFMLFQTAADLQVLDLSDNRLLSFPDNFFARNGQLRQLHLQRN 357
            |.|.....||.|.|:.|.:|.:....|....:|:.|.|..|||...|...|.....|.:|.:..|
Mouse   116 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN 180

  Fly   358 QLKSIGKHSLYSLRELRQLDLSQNSLSVIDRKAFESLDHLLALNVSGNNLTLLSSIIFQSLHALR 422
            ::..:..:....|..|:.|::..|.|..|..:||..|:.|..|.:...|||.:.:.....||.|.
Mouse   181 KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI 245

  Fly   423 QLDLSRNQFKQLPSGLFQRQRSLVLLRIDETPIEQFSNWISRYDESLVDPQVLH----RLRYLSV 483
            .|.|.......:....|:|...|.:|.|...|..........|..:|....:.|    .:.||:|
Mouse   246 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV 310

  Fly   484 QQNRKLTYLPATLFANTP-------NIRELLLAENGLLQL---------PTQISGLSRLQRLSVR 532
               |.|.||.....:..|       .:.|||..:.  :||         |....||:.|:.|:|.
Mouse   311 ---RHLVYLRFLNLSYNPIGTIEGSMLHELLRLQE--IQLVGGQLAVVEPYAFRGLNYLRVLNVS 370

  Fly   533 GNSLGSLPEN-IKELRQLHYLNILGNEYQCDCSMYWL--TAWLANTSTSLRHQMPQAQNHSNGST 594
            ||.|.:|.|: ...:..|..|.:..|...|||.:.|:  ..|..|    ...|.|         |
Mouse   371 GNQLTTLEESAFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLN----FNRQQP---------T 422

  Fly   595 NQTP--LDSYESIDHQIDAL-----KCQYGYRGDMLRVLSKLNCSVPTVVQFSEPKMHKLLSTAK 652
            ..||  :...|..|.. |.|     .|:..:..|  |...::.......|||             
Mouse   423 CATPEFVQGKEFKDFP-DVLLPNYFTCRRAHIRD--RKAQQVFVDEGHTVQF------------- 471

  Fly   653 LECQISGSPVPDIIWVTPRNKILRHHADPDKRPIIIDSKEDAHQPPSAQELAALMDESYIQSLNW 717
             .|:..|.|.|.|:|::||    :|         ::.:|.:.                       
Mouse   472 -VCRADGDPPPAILWLSPR----KH---------LVSAKSNG----------------------- 499

  Fly   718 TRQNSLVGRRVVLVENGSLLVHNISRIDSGLYTCYAFNVMGKASAGLRLYI------------DP 770
                     |:.:..:|:|.|......|:|.|.|.|.|..|..|....|::            ..
Mouse   500 ---------RLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVRSYSPDWPHQPNKT 555

  Fly   771 IVFYRVKIGSILFGTALATA---FLLLTLIVQGLRSCLSRWGICNRFYCCVN----RKKKSPRKH 828
            ..|...:.|.....:..||.   |.:.|||:......:|..|:.  .:|.|.    .:.|...||
Mouse   556 FAFISNQPGEGEANSTRATVPFPFDIKTLIIATTMGFISFLGVV--LFCLVLLFLWSRGKGNTKH 618

  Fly   829 QI 830
            .|
Mouse   619 NI 620

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG16974NP_001246018.1 leucine-rich repeat 206..228 CDD:275380 5/27 (19%)
leucine-rich repeat 229..252 CDD:275380 5/27 (19%)
LRR_RI <246..433 CDD:238064 51/190 (27%)
LRR_8 251..311 CDD:290566 19/63 (30%)
leucine-rich repeat 253..276 CDD:275380 6/26 (23%)
leucine-rich repeat 277..300 CDD:275380 7/22 (32%)
leucine-rich repeat 301..324 CDD:275380 7/22 (32%)
LRR_8 325..383 CDD:290566 15/57 (26%)
leucine-rich repeat 325..348 CDD:275380 8/22 (36%)
leucine-rich repeat 349..372 CDD:275380 4/22 (18%)
LRR_RI 351..>557 CDD:238064 56/226 (25%)
LRR_8 371..431 CDD:290566 18/59 (31%)
leucine-rich repeat 373..396 CDD:275380 8/22 (36%)
leucine-rich repeat 397..420 CDD:275380 6/22 (27%)
leucine-rich repeat 421..444 CDD:275380 5/22 (23%)
LRR_8 477..536 CDD:290566 21/74 (28%)
leucine-rich repeat 478..502 CDD:275380 8/30 (27%)
leucine-rich repeat 503..526 CDD:275380 8/31 (26%)
Ig <714..761 CDD:299845 11/46 (24%)
Lingo1XP_006511149.1 LRRNT 68..102 CDD:214470 9/47 (19%)
LRR <93..398 CDD:227223 82/309 (27%)
leucine-rich repeat 100..123 CDD:275380 7/22 (32%)
leucine-rich repeat 124..147 CDD:275380 7/22 (32%)
LRR_8 147..206 CDD:338972 15/58 (26%)
leucine-rich repeat 148..171 CDD:275380 8/22 (36%)
leucine-rich repeat 172..219 CDD:275380 12/46 (26%)
leucine-rich repeat 220..243 CDD:275380 6/22 (27%)
leucine-rich repeat 244..291 CDD:275380 10/46 (22%)
leucine-rich repeat 292..315 CDD:275380 7/25 (28%)
leucine-rich repeat 316..339 CDD:275380 4/22 (18%)
leucine-rich repeat 340..363 CDD:275380 5/24 (21%)
leucine-rich repeat 364..384 CDD:275380 8/19 (42%)
PCC 368..>448 CDD:188093 24/93 (26%)
Ig 466..541 CDD:386229 26/133 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D195414at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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