DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rsph1 and Pms2

DIOPT Version :10

Sequence 1:NP_609609.1 Gene:Rsph1 / 34712 FlyBaseID:FBgn0032478 Length:344 Species:Drosophila melanogaster
Sequence 2:XP_036020772.1 Gene:Pms2 / 18861 MGIID:104288 Length:875 Species:Mus musculus


Alignment Length:406 Identity:84/406 - (20%)
Similarity:132/406 - (32%) Gaps:157/406 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 EMSEEDLSAPEEEEDLGPNIGLYIGGRNAAGQRQGRGWAILPNGDQYDGNYRKGRRHGIGVYVFK 69
            |.|||:  ...||..|...|.....|....|..:|.|:|:...|:.|.|.:.:|..||.|.|::.
Mouse    65 EQSEEE--TQYEEPILTKLIVESYEGEKVRGLYEGEGFAVFQGGNTYHGMFSEGLMHGQGTYIWA 127

  Fly    70 DGSRY----------------------------------YGQYRC-------------GKRCGR- 86
            ||.:|                                  :|.::|             |||.|: 
Mouse   128 DGLKYEGDFVKNIPMNHGVYTWPDGSTYEGEVTNGMRNGFGMFKCGTQPVSYIGHWCHGKRHGKG 192

  Fly    87 ------------------------GIFIYPDGSVYEGNWRKNLKHGKGRYKYV-NGDNYSGDWFK 126
                                    ||..|..|::|||.|..|::||:||.::: ..:.|:|.|.|
Mouse   193 SIYYNQEGTSWYEGDWVYNIKKGWGIRCYKSGNIYEGQWENNMRHGEGRMRWLTTNEEYTGHWEK 257

  Fly   127 ---------------------------------GQRHGVGIYHFNSGKDGCCLSVRMKATWNSNM 158
                                             |.|||.|.:::.||       ...:..|.||.
Mouse   258 GIQNGFGTHTWFLKRIPNSQYPLRNEYIGEFVNGFRHGQGKFYYASG-------AMYEGEWASNK 315

  Fly   159 RTGPFELYIGNEDKCTILHG-IWDNLYPSGPAVFSFNNRYLLLGYFLPASYNMKAISNEDEMEDA 222
            :.|        ..:.|..:| :::.|         |:|.::...:.....|:...    |...||
Mouse   316 KQG--------RGRMTFKNGHVYEGL---------FSNDHIAQFFETEMDYSQSL----DRWSDA 359

  Fly   223 EERLEDEMGEAEPMEPTLWFAQEMAVYDFSLLPQEPVPLAISDSELSVCSLSTEPSMRSEEKISW 287
            .:|.....|           :...||       :||..|...|...|...|.|...:.....:..
Mouse   360 SQRSRQPRG-----------SSVSAV-------REPETLRKLDGSESRSVLGTSIELDLTLLLDM 406

  Fly   288 YGEGEEAEGEEGGEME 303
            |  .||::.||..::|
Mouse   407 Y--PEESQEEEKKQVE 420

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rsph1NP_609609.1 COG4642 <14..141 CDD:443680 49/232 (21%)
Pms2XP_036020772.1 COG4642 <86..336 CDD:443680 54/273 (20%)
vATP-synt_E 782..>829 CDD:419987
Blue background indicates that the domain is not in the aligned region.

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