Protein Alignment CG5439 and Rubicon

DIOPT Version :10

• Sequence 1: NP_609607.1
• Gene: CG5439 / 34710
• FlyBaseID: FBgn0032476
• Length: 520
• Species: Drosophila melanogaster
• Sequence 2: NP_572496.1
• Gene: Rubicon / 31803
• FlyBaseID: FBgn0030055
• Length: 827
• Species: Drosophila melanogaster
• Alignment Length: 557
• Identity: 119/557 - (21%)
• Similarity: 181/557 - (32%)
• Gaps: 190/557 - (34%)

  Fly    29 QRREDIFRRLQESAHKISQKFSGKELATERDESVQE------LCESLEELMSYGLRQ----SAGT 83
            |:|  ||.|..:|...:||:          ||.:.:      .|::.....|:.||:    :..|
  Fly   235 QKR--IFLRRLKSLPNLSQE----------DEELDDRAAFRRRCQTFSSSRSHKLREDHLDAPST 287

  Fly    84 SSFSAASFIQNMQEMVSGNAGGGSNNNDATFWEFCQTHLTPHE-----RQRYMDLKQIWTNVG-- 141
            ||.|:....:.:|.:         |.:|...|    |..||.|     .::.....:..|:||
  Fly   288 SSCSSHDSPRRIQLI---------NCDDIKIW----TDQTPQEVPEEVHEKLQQASKASTSVGGY 339

  Fly   142 RGRAFIRATLNEKRLHSHV---LTWLSDEEQL--------------HRFYTPWSLLLNDEAAKKL 189
            .|..|....|.....|..|   |....|...|              |..:...|:|  ||||...
  Fly   340 LGSFFGSPPLYTSWFHRGVGDDLNASGDGGMLDTFLPVNGRKLKKQHTLFEGVSML--DEAASST 402

  Fly   190 PEIVDSLSDVLFALNVDTTELNAPRRSTPSVAV--------KEEPIIFTTSPVPVVGRQKRPGIA 246
            ..|..:..|:..:....||...|    :.||::        ::....|..     :.||......
  Fly   403 ACISSAPWDIQGSAGDSTTSTTA----SSSVSITPGSDKMDQQSLASFLQ-----MSRQTHNNTQ 458

  Fly   247 VERPIECVSSTEDLLGALKPIESVEVQQILSKES--IEQELAQPQEEVNLGPF------------ 297
            :|:.......:|..:.|   ||.|:..:.|:..:  ....|::|    ||.|:
  Fly   459 LEKENAHFRISEACITA---IEHVKWSRRLATPAGPTSHNLSEP----NLMPYAEQIPGGGMQNH 516

  Fly   298 --DPIEPEL--EFLKTPLPDIGAH----VGESEL-------------YEDRSDT--SSQWSKSSS 339
              :.:..:|  .|.:..||.:| |    |.|.|.             :|..|.|  :|.|
  Fly   517 SAEAVGLQLISRFSEQQLPRLG-HLKWLVSEQEAPQQLLPLPTPKQDHEQASLTRGTSSW----- 575

  Fly   340 SANCLANSQQQAALEEH--------VNQLNERCALLETRVAELSLQNRLLIRRLTKQFEETGIDP 396
                 |..:||....||        :.:.|.|||....|||:...|:......|.|.
  Fly   576 -----APPRQQIIFTEHPSESRSKVLQKQNHRCAGCGMRVAKHLQQHFRYCTYLGKY-------- 627

  Fly   397 SSSLCS----NFLITIPHVKLAKTQRSGSHYTYEVHITMRQRLEHWTFFRRY------SEFYKLH 451
               ||:    |.:..||    |:..||.....|.|.....:.:|....|..:      |:.|| |
  Fly   628 ---LCTGCHRNQISAIP----ARILRSWDFRCYPVCSFAYRLIEQMYAFPLFHVPDLNSQLYK-H 684

  Fly   452 KSLLKTHPVVSAVEFPPKKHFGNMNLVFVEERRQQLQ 488
            |.|.|                       ..:||.|||
  Fly   685 KELAK-----------------------ARKRRLQLQ 698

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
CG5439	NP_609607.1	RUN	37..206	CDD:459241	42/202 (21%)
		PX_RUN	404..520	CDD:132810	21/91 (23%)
Rubicon	NP_572496.1	RUN_RUBCN	50..207	CDD:439048
		zf-RING_9	619..824	CDD:464030	26/119 (22%)