DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5439 and Kif16b

DIOPT Version :10

Sequence 1:NP_609607.1 Gene:CG5439 / 34710 FlyBaseID:FBgn0032476 Length:520 Species:Drosophila melanogaster
Sequence 2:XP_038960967.1 Gene:Kif16b / 311478 RGDID:1310146 Length:1876 Species:Rattus norvegicus


Alignment Length:581 Identity:110/581 - (18%)
Similarity:190/581 - (32%) Gaps:202/581 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 EAGFRSMRSQLAGSTFGQRREDIFRRLQESAHKISQKFSGKELATERDESVQELCESLEELMSY- 75
            |...|....::..|...|:||    .|:::..|:.|:.|..:..:..|..:||..:.|..|.|. 
  Rat   994 EEKVRRKEKEILESQEKQQRE----ALEQAVAKLEQRHSALKRRSTLDLEIQEQRQKLGSLHSSE 1054

  Fly    76 --GLRQSAGTS----SFSAASFIQNMQEM-----------------VSGNAGGGSNNNDATFWEF 117
              ||:.|...:    ....|.....:.|:                 :.|.|...|....|.    
  Rat  1055 WPGLQASLEANGERLQMDPARIEHEIHELKQKICEVDGVQRPHHGTLEGKAALSSLPPSAE---- 1115

  Fly   118 CQTHLTPHERQRYMDLKQIWTNVGRGRAFIRATLNEKRLH---------SHVLTWLSDEEQLHRF 173
             .:||.|     .||        .|..|:|...: ::|||         ||....|...|:||..
  Rat  1116 -NSHLAP-----LMD--------ARISAYIEEEV-QRRLHDLHRVISDASHAPAELKSNEELHNG 1165

  Fly   174 YT----------PWS------LLLNDEAAKKLPEIVDSLSDVLFALNVDTTELNAPRRSTPSVA- 221
            .|          |||      ||..|  |...|.::...|:|     ..:::.:.|.....|:: 
  Rat  1166 ATQRKLKYEKGQPWSARCGIPLLPKD--AVDSPSVLGEESEV-----YPSSQWSHPVSQNTSLST 1223

  Fly   222 ----VKEEPIIFTTSPVPVVGRQKRPGIAVERPIECVSSTEDLLGALKP--IESVEVQQILSKES 280
                ..:|.|:.::            |.||.:.|:......:..|.|:|  :..:|:..:..:.|
  Rat  1224 DFSLASQERIVLSS------------GHAVLKSIDDKFCYPESSGHLEPNCVHLLEISSLNERNS 1276

  Fly   281 IEQELAQPQEEVNLGPFDPIEPELEFLKTPLPDIGAHVGESELYEDRSD--TSSQWSKSSSSANC 343
            .:.:.:|.:.|.:.|           |.|              :|::..  |.|.|:.|.     
  Rat  1277 RDAQSSQIESENSSG-----------LMT--------------HEEKQSWGTESSWTLSQ----- 1311

  Fly   344 LANSQQQAALEEHVNQLNERCALLETRVAELSLQNRLLIRRLTKQFEE----TGIDPSS------ 398
              :..|||.::               |.::.::|:|.|:..|::...:    ||..|.|      
  Rat  1312 --HMSQQAPVD---------------RGSQQAMQSRELLFVLSESVSQREHPTGSSPQSVSASTL 1359

  Fly   399 ---------SLCSNFLITIPHVKLAKTQRSGSHYTYEVHITMRQRLEHWTFFRRYSEFYKLHKSL 454
                     |...|..:..|.|.:....:....|.|                .::|:.||.... 
  Rat  1360 SCEQQSEKDSAVKNTSVLAPLVNIRTEAKKRLGYVY----------------HKFSDLYKDTSG- 1407

  Fly   455 LKTHPVVSAVE-FPPKKHFGNM---------------NLVFVEERRQQLQIYLLNLVETLP 499
               |.:.:.|: ....||.|:|               .|..:|...|||.:..|.:..:.|
  Rat  1408 ---HLIQAGVKVMSHAKHVGSMCDPGGLASPVTTFIRGLPLLEHLPQQLPLSSLMVPSSPP 1465

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5439NP_609607.1 RUN 37..206 CDD:459241 47/217 (22%)
PX_RUN 404..520 CDD:132810 20/112 (18%)
Kif16bXP_038960967.1 KISc_KIF1A_KIF1B 15..368 CDD:276816
Kinesin_assoc 367..479 CDD:465047
FHA 449..565 CDD:469597
Smc <609..>1087 CDD:440809 21/96 (22%)
Blue background indicates that the domain is not in the aligned region.

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