DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5439 and SNX13

DIOPT Version :9

Sequence 1:NP_609607.1 Gene:CG5439 / 34710 FlyBaseID:FBgn0032476 Length:520 Species:Drosophila melanogaster
Sequence 2:NP_001337791.1 Gene:SNX13 / 23161 HGNCID:21335 Length:968 Species:Homo sapiens


Alignment Length:598 Identity:113/598 - (18%)
Similarity:215/598 - (35%) Gaps:192/598 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 IFRRLQESAHKISQKFSGKELATERDESVQELCESL--------EELMSYGLRQSAGTSSFSAAS 90
            :||:.|:   ||          ||:|:.|:...|.|        .|:.....|....||......
Human   171 VFRKAQQ---KI----------TEKDDQVKGTAEDLVDTFFEVEVEMEKEVCRDLVCTSPKDEEG 222

  Fly    91 FIQNMQEMVSGNAGGGSNNNDATFWEFCQTHLTPHERQRYMDLKQIWTNVGRGRAFIRATLNEKR 155
            |::::.|::                  ....|.|.:.|..:           .|.|:|..| .:.
Human   223 FLRDLCEVL------------------LYLLLPPGDFQNKI-----------MRYFVREIL-ARG 257

  Fly   156 LHSHVLTWLSDEEQLHRFYTPWSLL---LNDEAAKKLPEIVDSLSDV-------------LFALN 204
            :...::..|||.:.::: |..|.:.   .|.||...:.::.|::.::             |.:|:
Human   258 ILLPLINQLSDPDYINQ-YVIWMIRDSNCNYEAFMNIIKLSDNIGELEAVRDKAAEELQYLRSLD 321

  Fly   205 VDTTELNAPRRSTPSVAVKEEPIIFTTSPVPVVGRQKRPGIAVERPIECVSSTEDL--------L 261
            ....::|..:....|       ::|...             ..:..|:.:.|.:::        .
Human   322 TAGDDINTIKNQINS-------LLFVKK-------------VCDSRIQRLQSGKEINTVKLAANF 366

  Fly   262 GAL--KPIESVEVQQILSKESIEQELAQPQEEVNLGPFDPIE-------PELEFLKTPLPDIGAH 317
            |.|  .|::|:.|..: :.:.....:.|...:.:|..:..:|       .:||.|.:...| |.|
Human   367 GKLCTVPLDSILVDNV-ALQFFMDYMQQTGGQAHLFFWMTVEGYRVTAQQQLEVLLSRQRD-GKH 429

  Fly   318 -------------VGESELYEDRSDTSSQWSKSSSSANCLANSQQQAALEEHVNQLNERCAL--- 366
                         ||   :||       |:....:|.....:....|.|.:.:|..:....:   
Human   430 QTNQTKGLLRAAAVG---IYE-------QYLSEKASPRVTVDDYLVAKLADTLNHEDPTPEIFDD 484

  Fly   367 LETRVAELSL----------QNRLLIRRLTK--------------------QFEETG-----IDP 396
            ::.:|.||.|          ||.|.:|.|.:                    ....||     :|.
Human   485 IQRKVYELMLRDERFYPSFRQNALYVRMLAELDMLKDPSFRGSDDGDGESFNGSPTGSINLSLDD 549

  Fly   397 SSSLCSNFLITIPHVKLAKTQRS-----------GSH-YTYEVH-ITMRQR----LEHWTFFRRY 444
            .|::.|:..:.: |..::.|..:           ..| .||.:: ||:.:|    .|.|..:|||
Human   550 LSNVSSDDSVQL-HAYISDTVYADYDPYAVAGVCNDHGKTYALYAITVHRRNLNSEEMWKTYRRY 613

  Fly   445 SEFYKLHKSLLKTHPVVSAV-EFPPKKHFGNMNLVFVEERRQQLQIYLLNLVETLPQVEACK-SK 507
            |:|:..|..:.:....:|:: :.|.||.|.||:..|:|:|::.|..||    :.|...|..| |.
Human   614 SDFHDFHMRITEQFESLSSILKLPGKKTFNNMDRDFLEKRKKDLNAYL----QLLLAPEMMKASP 674

  Fly   508 AELQKVFPFFRDR 520
            |....|:.|..::
Human   675 ALAHYVYDFLENK 687

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5439NP_609607.1 RUN 64..206 CDD:280855 26/165 (16%)
PX_RUN 404..520 CDD:132810 36/134 (27%)
SNX13NP_001337791.1 PXA 97..284 CDD:214611 29/156 (19%)
RGS_SNX13 377..511 CDD:188674 26/145 (18%)
PX_SNX13 557..687 CDD:132783 36/134 (27%)
Nexin_C 803..911 CDD:312222
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2101
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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