DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5439 and Snx13

DIOPT Version :9

Sequence 1:NP_609607.1 Gene:CG5439 / 34710 FlyBaseID:FBgn0032476 Length:520 Species:Drosophila melanogaster
Sequence 2:XP_006515125.3 Gene:Snx13 / 217463 MGIID:2661416 Length:1144 Species:Mus musculus


Alignment Length:620 Identity:112/620 - (18%)
Similarity:205/620 - (33%) Gaps:236/620 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 IFRRLQE-----------SAHKISQKFSGKELATERDES--------------VQELCESL---- 69
            :||:.|:           :|..:.:.|...|:..|:|..              :::|||.|    
Mouse   347 VFRKAQQRVTEKDDQVKGTAEDLVETFFEVEVEMEKDVCRDLVCTSPKDEEGFLRDLCEVLLYLL 411

  Fly    70 -------EELMSYGLRQSAG-------TSSFSAASFIQNMQEMVSGNAGGGSNNNDATFWEFCQT 120
                   .::|.|.:|:...       .:..|...:|                 |....|....:
Mouse   412 LPPGDFQSKIMRYFVREILARGILLPLINQLSDPDYI-----------------NQYVIWMIRDS 459

  Fly   121 HLTPHERQRYMDLKQIWTNVGRGRAFIRATLNEKRLHSHVLTWLSDEEQLHRFYTPWSLLLNDEA 185
            :.   ..:.:|::.::..|:|...|     :.:|         .::|.|..|     ||   |.|
Mouse   460 NC---NYEAFMNIIKLSDNIGELEA-----VRDK---------AAEELQYLR-----SL---DTA 499

  Fly   186 AKKLPEIVDSLSDVLFALNV---------DTTELNAPRRST----------PSVAVKEEPIIFTT 231
            ...:..|.:.::.:||...|         ...|:|..:.:.          .|:.|....:.|..
Mouse   500 GDDINTIKNQINSLLFVKKVCDSRIQRLQSGKEINTVKLAANFGKLCTVPLDSILVDNVALQFFM 564

  Fly   232 SPVPVVGRQKR-------PG--IAVERPIECVS--------STEDLLGALKPIESVEVQQILSKE 279
            ..:...|.|..       .|  :..::.:|.:|        .|....|.|:.......:|.||  
Mouse   565 DYMQQTGGQAHLFFWMTVEGYRVTAQQQLEVLSGRQRDGKQQTNQTKGLLRAAAVGIYEQYLS-- 627

  Fly   280 SIEQELAQPQEEVNLGPFDPIEPELEFLKTPLPDIGAHVGES-ELYEDRSDTSSQWSKSSSSANC 343
                |.|.|:..|:           ::|...|.|...|...: |:::|                 
Mouse   628 ----EKASPRVTVD-----------DYLVAKLADTLNHEDPTPEIFDD----------------- 660

  Fly   344 LANSQQQAALEEHVNQLNERCALLETRVAELSL----------QNRLLIRRLTK----------- 387
                                   ::.:|.||.|          ||.|.:|.|.:           
Mouse   661 -----------------------IQRKVYELMLRDERFYPSFRQNALYVRMLAELDMLKDPSFRG 702

  Fly   388 ---------QFEETG-----IDPSSSLCSNFLITIPHVKLAKTQRS-----------GSH-YTYE 426
                     ....||     :|..||:.|:..:.: |..::.|..:           ..| .||.
Mouse   703 SDDGDGESFNGSPTGSINLSLDDLSSVTSDDSVQL-HAYISDTVYADYDPYAVAGVCNDHGKTYA 766

  Fly   427 VH-ITMRQR----LEHWTFFRRYSEFYKLHKSLLKTHPVVSAV-EFPPKKHFGNMNLVFVEERRQ 485
            :: ||:.:|    .|.|..:||||:|:..|..:.:....:|:: :.|.||.|.||:..|:|:|::
Mouse   767 LYAITVHRRNLNTEEMWKTYRRYSDFHDFHMRITEQFENLSSILKLPGKKTFNNMDRDFLEKRKK 831

  Fly   486 QLQIYLLNLVETLPQVEACKSKAELQKVFPFFRDR 520
            .|..| |.|:.|...::|  |.|....|:.|..::
Mouse   832 DLNAY-LQLLLTPEMMKA--SPALAHCVYDFLENK 863

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5439NP_609607.1 RUN 64..206 CDD:280855 27/168 (16%)
PX_RUN 404..520 CDD:132810 36/133 (27%)
Snx13XP_006515125.3 PHA03381 6..>146 CDD:177618
PXA 273..460 CDD:214611 19/129 (15%)
RGS_SNX13 553..687 CDD:188674 30/190 (16%)
PX_SNX13 733..863 CDD:132783 36/133 (27%)
Nexin_C 979..1087 CDD:370015
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2101
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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