DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sfmbt and scml2

DIOPT Version :10

Sequence 1:NP_001137821.1 Gene:Sfmbt / 34709 FlyBaseID:FBgn0032475 Length:1243 Species:Drosophila melanogaster
Sequence 2:XP_012812742.2 Gene:scml2 / 780057 XenbaseID:XB-GENE-6043728 Length:706 Species:Xenopus tropicalis


Alignment Length:803 Identity:185/803 - (23%)
Similarity:294/803 - (36%) Gaps:226/803 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   541 RLSKENFN-----------AAPVTCFPHA---PGCEVWDNLGVGMKVEVENTDCDSIEVIQPGQT 591
            :.:||.||           |||..||..:   |.    ::..||||:|..:.           :.
 Frog     8 KTAKEKFNWDDYLNQVGSVAAPPNCFKQSRTPPS----NDFKVGMKLEAHDP-----------RN 57

  Fly   592 PTSFWVATILEIKGYKALMSYEGFDTDSHDFWVNLCNAEVHSVGWCATRGKPLIPPRTIEHKYKD 656
            .||..:||::.|.|.:..:..:|.| |.:|||..:.:.::..:|.|..:|..|.||.........
 Frog    58 ITSICIATVVGITGARLRLRLDGSD-DKNDFWRLVDSCDIQQIGTCEKKGDMLQPPLGFRMNASS 121

  Fly   657 WKDFLVGRLSGARTLP-SNFYNKINDSLQSRFRLGLNLECVDKDRISQVRLATVTKIVGKRLFLR 720
            |..||:..|:||...| :.|..:.....||.|:.|:.||.|||.....:..||:..:.|..:|:.
 Frog   122 WPMFLLKTLNGADMAPITCFKQEPQKPSQSFFKTGMKLEAVDKKNPYLICPATIGDVKGDDIFIT 186

  Fly   721 Y------FDSDDGFWCHEDSPIIHPVGWATTVGHNL-----------------AAPQDYLERML- 761
            :      ||    :||..||..|.|:||.:..|.:|                 |:|...:.|.: 
 Frog   187 FDGWRGAFD----YWCKYDSRDIFPIGWCSLTGDSLQPPGNSVSLPRTSSTPTASPIKGVRRSMQ 247

  Fly   762 ---------AGREAMIE--VHEDDATIELFK--MNFTFD------EYYSDGKTNSFVEGMKLEAV 807
                     .||:.|.:  :.:..|:....|  .|.|..      |..:..|......|.|.|.:
 Frog   248 SPQKPVQAQKGRKPMRDKCLGQTSASPRKGKRPKNTTLSRNTPNAENQTKSKGTGLKPGRKKETL 312

  Fly   808 DPLNLSSICPATV-------MAVLKFGYMMIRIDSYQPDASGSDWFCYHEKSPCIFPAGFCSVNN 865
             .|| ||:.|...       ..:||.|..::                   .||....:..|.   
 Frog   313 -ALN-SSLPPVNTSDGDSNKSQILKDGVGIL-------------------GSPVAVISTVCV--- 353

  Fly   866 ISVTPPNGYDSRTFTWEGYLRDTGAVAAGQHLFHRII---PDH---GFEVGMSLE-----CADLM 919
                              |:...|  .:|.||..:.:   |||   | .|.:.|:     |.|  
 Frog   354 ------------------YVNKHG--NSGPHLDKKKVLQLPDHFGPG-PVNVVLQQAVQACVD-- 395

  Fly   920 DPRLVCVATVARVV----------GRLLKVHFDGWTDEYDQWLDCESADIYPVGWCVLVNHKLEG 974
                 | |..:::|          |..:...|||         :..|..:.||.....|...|| 
 Frog   396 -----C-AYYSKIVFSFLKSGHHGGEAITASFDG---------EKHSVHLPPVNSASFVLRFLE- 444

  Fly   975 PPRVAHQQ------APKPAPKPKIQRKRKPKKGAAGGKTPTDNNTQSVKSRTIALKT-------- 1025
              ::.|..      :.:|.         .|..|  |..:|||.:........|..::        
 Frog   445 --KLCHSLQCDNLFSSQPF---------SPHMG--GAHSPTDYDRSKTTKEEITDRSNKRYCQDP 496

  Fly  1026 -------TPHLPKLSIKLELKPEHHNAAFYENNQPEEEGDEEDPDADGDGDGSTSHISEQSTTQS 1083
                   :|.||:..:.   .||...:...||..|:::...|:.........:|:..:.::||: 
 Frog   497 PPFSAPLSPKLPRSEVH---PPEAEMSPTEENCMPKDQRFSEESMDSALNTVNTASPATRNTTE- 557

  Fly  1084 SSDLIAGSGSGSGSASLVTLATGSNKTVKKSTTKSPAPPTVGRKATSYIANSSATNNKYIPRLAD 1148
            ..::.|.|....||...||..:.....|::|::.|.:       .:.|..:|.....:.|...:.
 Frog   558 YRNMGATSAYYRGSVQPVTATSNGAPVVRRSSSSSAS-------NSCYYDSSRNRTQRRIEAASS 615

  Fly  1149 IDSSEPH---------LELVPDTWNVYDVSQFLRVNDCTA---HCDTFSRNKIDGKRLLQLTKDD 1201
            ....|.|         |...|.||:|.||..|::..|..|   |.:.|.|::|||..||.|..|.
 Frog   616 TTGPELHSTERQTTQSLSKDPATWSVDDVMCFVKEADPQALAPHAELFRRHEIDGTALLLLRSDM 680

  Fly  1202 IMPLLGMKVGPALKISDLIAQLK 1224
            ||..:|:|:|||||:...|.:||
 Frog   681 IMKYMGLKLGPALKLCYHIERLK 703

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SfmbtNP_001137821.1 MBT_dSfmbt_rpt1 564..672 CDD:439109 29/107 (27%)
MBT_dSfmbt_rpt2 674..753 CDD:439112 27/101 (27%)
MBT_dSfmbt_rpt3 798..904 CDD:439115 19/115 (17%)
MBT_dSfmbt_rpt4 905..976 CDD:439118 19/88 (22%)
SAM_Scm-like-4MBT 1160..1226 CDD:188979 31/68 (46%)
scml2XP_012812742.2 MBT 14..143 CDD:459242 39/144 (27%)
MBT_SCML2_rpt2 148..224 CDD:439099 25/79 (32%)
RBR 255..316 CDD:465382 14/62 (23%)
SLED 350..459 CDD:463469 28/152 (18%)
SAM_Scm 633..704 CDD:188977 31/71 (44%)

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