DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sfmbt and Samd1

DIOPT Version :10

Sequence 1:NP_001137821.1 Gene:Sfmbt / 34709 FlyBaseID:FBgn0032475 Length:1243 Species:Drosophila melanogaster
Sequence 2:NP_001074884.1 Gene:Samd1 / 666704 MGIID:2142433 Length:519 Species:Mus musculus


Alignment Length:332 Identity:69/332 - (20%)
Similarity:101/332 - (30%) Gaps:115/332 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   975 PPRVA---------HQQAPKPAPKPKIQRKRKPKKGAAGGKTP---------------------- 1008
            ||.||         .||.|.|.|:|      .|:.|||....|                      
Mouse   190 PPAVAAREPPAPPQQQQPPPPQPQP------PPEGGAARAGGPARPVSLREVVRYLGGSGGASGR 248

  Fly  1009 -TDNNTQSV-----------KSRTIALK--------TTPHLPKLSIKLELKPEHHNAAFYENNQP 1053
             |....|.:           ::|..||.        ..|  |..|.:............:|..:.
Mouse   249 LTRGRVQGLLEEEAARGRLERTRLGALALPRGDRPGRAP--PAASARAARSKRGGEERVFEKEEE 311

  Fly  1054 EEEGDEEDPDADGDGDGS----------TSH--ISEQSTTQSSSDLI-------------AGSGS 1093
            :|:.|||:.:.|...:||          ..|  |:.:...||:.:.:             .|.|.
Mouse   312 DEDEDEEEEEEDNVSEGSEVPESDRPAGAQHHQINGERGPQSAKERVKEWSPCGPYQGQDEGRGP 376

  Fly  1094 GSGSA-------SLVTLATGSNKTVKKSTTKSPAPPTVGRKATSYIANSSATNNKYIPRLADIDS 1151
            ..||.       :.|....||........:.||.|...|:                 |.|...|.
Mouse   377 APGSCTRQVFPMTAVNKEGGSACVGAAPDSPSPVPLPPGK-----------------PALPGADG 424

  Fly  1152 S-------EPHLELVPDTWNVYDVSQFLRVNDCTAHCDTFSRNKIDGKRLLQLTKDDIMPLLGMK 1209
            :       .......|..|.|.||.::............|...:||||.||.:.:.|::..|.::
Mouse   425 TPFGCPPGRKEKPTDPVEWTVMDVVEYFTEAGFPEQATAFQEQEIDGKSLLLMQRTDVLTGLSIR 489

  Fly  1210 VGPALKI 1216
            :||||||
Mouse   490 LGPALKI 496

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
SfmbtNP_001137821.1 MBT_dSfmbt_rpt1 564..672 CDD:439109
MBT_dSfmbt_rpt2 674..753 CDD:439112
MBT_dSfmbt_rpt3 798..904 CDD:439115