DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sfmbt and Samd1

DIOPT Version :9

Sequence 1:NP_001137821.1 Gene:Sfmbt / 34709 FlyBaseID:FBgn0032475 Length:1243 Species:Drosophila melanogaster
Sequence 2:NP_001074884.1 Gene:Samd1 / 666704 MGIID:2142433 Length:519 Species:Mus musculus


Alignment Length:332 Identity:69/332 - (20%)
Similarity:101/332 - (30%) Gaps:115/332 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   975 PPRVA---------HQQAPKPAPKPKIQRKRKPKKGAAGGKTP---------------------- 1008
            ||.||         .||.|.|.|:|      .|:.|||....|                      
Mouse   190 PPAVAAREPPAPPQQQQPPPPQPQP------PPEGGAARAGGPARPVSLREVVRYLGGSGGASGR 248

  Fly  1009 -TDNNTQSV-----------KSRTIALK--------TTPHLPKLSIKLELKPEHHNAAFYENNQP 1053
             |....|.:           ::|..||.        ..|  |..|.:............:|..:.
Mouse   249 LTRGRVQGLLEEEAARGRLERTRLGALALPRGDRPGRAP--PAASARAARSKRGGEERVFEKEEE 311

  Fly  1054 EEEGDEEDPDADGDGDGS----------TSH--ISEQSTTQSSSDLI-------------AGSGS 1093
            :|:.|||:.:.|...:||          ..|  |:.:...||:.:.:             .|.|.
Mouse   312 DEDEDEEEEEEDNVSEGSEVPESDRPAGAQHHQINGERGPQSAKERVKEWSPCGPYQGQDEGRGP 376

  Fly  1094 GSGSA-------SLVTLATGSNKTVKKSTTKSPAPPTVGRKATSYIANSSATNNKYIPRLADIDS 1151
            ..||.       :.|....||........:.||.|...|:                 |.|...|.
Mouse   377 APGSCTRQVFPMTAVNKEGGSACVGAAPDSPSPVPLPPGK-----------------PALPGADG 424

  Fly  1152 S-------EPHLELVPDTWNVYDVSQFLRVNDCTAHCDTFSRNKIDGKRLLQLTKDDIMPLLGMK 1209
            :       .......|..|.|.||.::............|...:||||.||.:.:.|::..|.::
Mouse   425 TPFGCPPGRKEKPTDPVEWTVMDVVEYFTEAGFPEQATAFQEQEIDGKSLLLMQRTDVLTGLSIR 489

  Fly  1210 VGPALKI 1216
            :||||||
Mouse   490 LGPALKI 496

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SfmbtNP_001137821.1 MBT 542..647 CDD:214723
MBT 658..753 CDD:214723
MBT 767..871 CDD:214723
MBT 882..975 CDD:214723 69/332 (21%)
TonB_N <975..1040 CDD:292650 23/115 (20%)
SAM_Scm-like-4MBT 1160..1226 CDD:188979 20/57 (35%)
SAM 1160..1224 CDD:197735 20/57 (35%)
Samd1NP_001074884.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..30
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 87..232 15/47 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 261..381 21/121 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 417..439 3/21 (14%)
SAM_Atherin-like 440..508 CDD:188982 20/57 (35%)
SAM 440..506 CDD:197735 20/57 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167839852
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.