DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sfmbt and Scml2

DIOPT Version :10

Sequence 1:NP_001137821.1 Gene:Sfmbt / 34709 FlyBaseID:FBgn0032475 Length:1243 Species:Drosophila melanogaster
Sequence 2:XP_038956122.1 Gene:Scml2 / 367793 RGDID:1564289 Length:1063 Species:Rattus norvegicus


Alignment Length:305 Identity:88/305 - (28%)
Similarity:126/305 - (41%) Gaps:58/305 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   739 PVGWATTVGHNLAAPQDYLERMLAGREAMIEVHEDDATIELFKMNFTFD-------------EYY 790
            |.|....|... |||.      ..|||...||:....|..  :..|.:|             ||:
  Rat    10 PAGLGQLVAEQ-AAPS------TGGRENTAEVNTMGQTAN--EDYFDWDKYLKETGSVSAPSEYF 65

  Fly   791 SDGK---TNSFVEGMKLEAVDPLNLSSICPATVMAVLKFGYMMIRIDSYQPDASGSDWFCYHEKS 852
            ...|   ||.|..||||||.||.|:.|:|.|:|:.:.. ..:.:|:|.  .|.....|...  .|
  Rat    66 RQAKTPPTNEFQIGMKLEARDPRNIDSVCVASVIGITG-ARLRLRLDG--GDNKNDFWRLV--DS 125

  Fly   853 PCIFPAGFCSVNNISVTPPNGYDSRTFTWEGYLRDTGAVAAGQHLFHRII--------PDHGFEV 909
            ..|.|.|.|......:.||.||.....:|..:|.   .|..|..|...:.        |.:.|.|
  Rat   126 SDIQPVGTCEQEGDLLQPPLGYRMNASSWPMFLL---RVLTGSELAPAVFFKKEPPRPPQNNFIV 187

  Fly   910 GMSLECADLMDPRLVCVATVARVVGRLLKVHFDGWTDEYDQWLDCESADIYPVGWCVLVNHKLEG 974
            ||.:|..|..:|.::|.||:..|.|..:.:.||||:..:|.|...:|.||:|||||.|....|:.
  Rat   188 GMKIEAIDRKNPFMICPATIGAVSGDQVHITFDGWSGAFDYWCSYDSRDIFPVGWCRLTGDILQP 252

  Fly   975 PPRVAHQQAPKPAPKPKIQRKRKPKKGAAGGKTPTDNNTQSVKSR 1019
            |.::               |:|:|:  ..|...|....|.|::::
  Rat   253 PGKI---------------RERRPR--GRGMTRPGKFGTTSLENK 280

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SfmbtNP_001137821.1 MBT_dSfmbt_rpt1 564..672 CDD:439109
MBT_dSfmbt_rpt2 674..753 CDD:439112 4/13 (31%)
MBT_dSfmbt_rpt3 798..904 CDD:439115 32/113 (28%)
MBT_dSfmbt_rpt4 905..976 CDD:439118 28/70 (40%)
SAM_Scm-like-4MBT 1160..1226 CDD:188979
Scml2XP_038956122.1 MBT 45..175 CDD:459242 39/137 (28%)
MBT_dScm-like_rpt2 180..254 CDD:439082 29/73 (40%)
rplD 669..>765 CDD:184900
SLED 806..915 CDD:463469
SAM_Scm 991..1061 CDD:188977
Blue background indicates that the domain is not in the aligned region.

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