DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sfmbt and Phc2

DIOPT Version :9

Sequence 1:NP_001137821.1 Gene:Sfmbt / 34709 FlyBaseID:FBgn0032475 Length:1243 Species:Drosophila melanogaster
Sequence 2:NP_001013187.2 Gene:Phc2 / 313038 RGDID:1307912 Length:850 Species:Rattus norvegicus


Alignment Length:1132 Identity:209/1132 - (18%)
Similarity:343/1132 - (30%) Gaps:385/1132 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   185 TSSDKDI------SQSSSSCMAQMPGSLGVP---------GVEHDLLVPLPDGLLHHKLLGTTLV 234
            |||...|      :.|||.|.:...|..|.|         |:.....|.:....||.:       
  Rat    10 TSSRASITTNTSGTNSSSGCSSSSGGGSGRPTAPQISVYSGIPDRQTVQVIQQALHRQ------- 67

  Fly   235 PAMGTLNGNAFGNIMVSTENTSSKQMQRTYSTAKGANSTATTATCSASTSSALRSQRKTRKIEPV 299
                              .:|:::.:|:.|:..:......|.|......|||     :.:.:..|
  Rat    68 ------------------PSTAAQYLQQMYAAQQQHLMLQTAALQQQHLSSA-----QLQSLAAV 109

  Fly   300 NRPGLVLKTPIAYRGNIDPSVIPIQKDGMAVCKRCGAIGVKHTFYTKSRRFCSMACARGELYSLV 364
            .:..||.....:..|:...|..|.|...:.:.                   .|.|.|:      :
  Rat   110 QQASLVANRQGSTSGSSVSSQAPAQSSSLNLA-------------------ASPAAAQ------L 149

  Fly   365 LNTKMEGDQATTSSPDPGAGSESADLPGDQQQ---SQSDIELDLHAAHIKNANYRFRITDQSKIT 426
            :|.....:.||.|..     ::.|.|.|:...   :.|..::.|.|..:.........|.|.:: 
  Rat   150 INRAQSVNSATASGL-----AQQAVLLGNTSSPALTASQAQMYLRAQMLIFTPTATVATVQPEL- 208

  Fly   427 QLNSFGEPMSMGGDAAANNVQMAADETIAALNGGAVGDATAPGSTEEGASTPNSYLSAAPTPKAL 491
               ..|.|......|...|:.:...:|.||   .|...|:.|..|:....:    |:..|||.: 
  Rat   209 ---GTGSPARPPTPAQVQNLTLRTQQTPAA---AAAAAASGPAPTQPVLPS----LALKPTPSS- 262

  Fly   492 RLFKDIYPQDDLPQIPKYERLPVPCPQMEKIISIRRRMYDPTHSYDWLPRLSKENFNAAPVTCFP 556
                    ...||          |.||...::                        ..:||...|
  Rat   263 --------SQPLP----------PTPQGRTVV------------------------QGSPVGAKP 285

  Fly   557 HAPGCEVWDNLGVGMKVEVENTDCDSIEVIQPGQTPTSFWVATI----LEIKGYKALMSYEGFDT 617
                 .|.||:...:|     ||.:|....:||  |....|.|:    |....|..|..::....
  Rat   286 -----SVTDNVTEPLK-----TDGNSNMEARPG--PDRATVPTVATHQLTAPAYTQLQPHQLLPQ 338

  Fly   618 DSHDFWVNLCNAEVHSVGWCATRGKPLIPPRTIEHKYKDWKDFLVGRLSGARTLPSNFYNKINDS 682
            .|          ..|.......:.:|. |||.........:...|......:..|......:...
  Rat   339 PS----------SKHPQPQFVAQQQPQ-PPRPTPQVQSQPQLAAVSPSLALQPSPEGHAMPLGPV 392

  Fly   683 LQSRFRLGLNLEC----VDKDRISQVRLATVTKIVGKRLFLRYFDSDDGFWCHEDSPII-----H 738
            .|:     |.|:|    |.|...||                         .||..:|..     |
  Rat   393 TQA-----LPLQCSTAHVHKPGSSQ-------------------------QCHLPTPDSGSQNGH 427

  Fly   739 PVGWATTVGHNLAAPQDYLERMLAGREAMIEVHEDDATIELFKMNFTFDEYYSDGKTNSFVEGMK 803
            |.|    |.|   |||...:            |.....::|...:....:...|    .:.|.:.
  Rat   428 PEG----VSH---APQRRFQ------------HTSAVILQLQPASPVPQQCAPD----DWKEVVP 469

  Fly   804 LEAVDPLNLSSICP--ATVMAVLKFGYMMIRIDSYQPDASGSDWFCYHEKSPCIFPAGFCSVNNI 866
            .|...|:....:.|  ..::..:..|....:..:.|...:       ||....|..| ...:::.
  Rat   470 AEKSVPVTRPGLSPHQQAIITAIPGGLPGPKSPNIQQCPA-------HETGQGIVHA-LTDLSSP 526

  Fly   867 SVTPPNGYDSRTFT----WEGYLRDTGAVAAGQHLFHRIIPDHGFEVGMSLECADLMDPRLVCVA 927
            .:|..||..:.:.|    ..|..:...|:...|.|.|.|   .||.:.                 
  Rat   527 GMTSGNGNSASSITGTAPQNGENKPPQAIVKPQILTHVI---EGFVIQ----------------- 571

  Fly   928 TVARVVGRLLKVHFDGWTDEYDQWLDCESADIYPVGWCVLVNHKLEGPPRVAHQQAPKPAPKPKI 992
                                       |.|:.:|||...|:...|                    
  Rat   572 ---------------------------EGAEPFPVGRSSLLVGNL-------------------- 589

  Fly   993 QRKRKPKKGAAGGKTPTDNNTQSVKSRTIALKTTPHLPK-------LSIKLEL------------ 1038
              |:|..:|....|.|..::|.:..|.    ...|:|.:       |.:|.||            
  Rat   590 --KKKYAQGFLPEKLPQQDHTTTTDSE----MEEPYLQESKEEGTPLKLKCELCGRVDFAYKFKR 648

  Fly  1039 --------KPEHHNAA-------FYENNQPEEEGDEEDPDADGDGDGSTSHISEQSTTQSSSDLI 1088
                    ..:.:|..       |:.:....::.            |:|:|...:::..|...|.
  Rat   649 SKRFCSMACAKRYNVGCTKRVGLFHSDRSKLQKA------------GTTTHNRRRASKASLPTLT 701

  Fly  1089 AGS-GSGSGSASL-VTLA-------TGSNKTVKKSTTKSPAPPTVGRKATSYIANSSATNNKYIP 1144
            ..: ...||:..| ||.|       ..|::....|:.:.|..|         |:.||:|:.:...
  Rat   702 KDTKKQPSGTVPLSVTAALQLAHSQEDSSRCSDNSSYEEPLSP---------ISASSSTSRRRQG 757

  Fly  1145 RLADIDSSEPHL-ELV----------PDTWNVYDVSQFLR-VNDCTAHCDTFSRNKIDGKRLLQL 1197
            : .|::.|:.|: :||          |..|||.||.:|:| :..|....:.|...:|||:.||.|
  Rat   758 Q-RDLELSDMHMRDLVGMGHHFLPSEPTKWNVEDVYEFIRSLPGCQEIAEEFRAQEIDGQALLLL 821

  Fly  1198 TKDDIMPLLGMKVGPALKISDLIAQLK 1224
            .:|.:|..:.:|:||||||...|:.||
  Rat   822 KEDHLMSAMNIKLGPALKIYARISMLK 848

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SfmbtNP_001137821.1 MBT 542..647 CDD:214723 21/108 (19%)
MBT 658..753 CDD:214723 18/103 (17%)
MBT 767..871 CDD:214723 14/105 (13%)
MBT 882..975 CDD:214723 15/92 (16%)
TonB_N <975..1040 CDD:292650 13/91 (14%)
SAM_Scm-like-4MBT 1160..1226 CDD:188979 28/66 (42%)
SAM 1160..1224 CDD:197735 26/64 (41%)
Phc2NP_001013187.2 PHC2_SAM_assoc 662..780 CDD:293222 26/139 (19%)
SAM_Ph1,2,3 781..849 CDD:188976 28/68 (41%)
SAM 783..850 CDD:197735 28/66 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166343709
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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