DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sfmbt and L3mbtl1

DIOPT Version :10

Sequence 1:NP_001137821.1 Gene:Sfmbt / 34709 FlyBaseID:FBgn0032475 Length:1243 Species:Drosophila melanogaster
Sequence 2:XP_017447769.1 Gene:L3mbtl1 / 311613 RGDID:1307316 Length:884 Species:Rattus norvegicus


Alignment Length:933 Identity:212/933 - (22%)
Similarity:331/933 - (35%) Gaps:287/933 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   372 DQATTSSPDPGAGSESADL-PGDQ-----QQSQSDIELD-------LHAAHIKNANYRFRITDQS 423
            |....|:|..|:|...::| |..|     ..:|:.||::       .|...........:..|..
  Rat   152 DWTGVSAPLAGSGMRPSELGPASQFRINEYATQNMIEIERPRSPEQRHEGGTAGREADIQHPDVH 216

  Fly   424 KITQLNSFGE--PMSMGGDAAANNVQMAADETIAALNGGAVGDATAPGSTEEGASTPNSYLSAAP 486
            |..|     |  |.....||.:...|....:....|:.|:.||.......:......||..:.|.
  Rat   217 KDPQ-----EVIPQEPSVDAGSCKCQTCGPQQSIGLDVGSSGDRCPQPFQKRSVIVENSGCTVAS 276

  Fly   487 ---TPKALRLFKDIY--PQDDLPQIPKY------ERLPVPCP------QMEKIISIRRRMYDPTH 534
               .|...|..|:..  .::..|:..|.      :|.|.|..      ...:::|..::     .
  Rat   277 ELIKPMKKRKHKEYQSPSEESEPEAMKQGKGKDPDREPTPGTSENEEWSRSQLVSSEKK-----E 336

  Fly   535 SYDWLPRLSKENFNAAPVTCFPHAPGCEVWDN-LGVGMKVEVENTDCDSIEVIQPGQTPTSFWVA 598
            .:.|...|.::....|||:.|..:.......| ..:|||          :|.:.| |.|:.::|.
  Rat   337 GWSWESYLEEQKAVTAPVSLFQDSQAVTHNKNGFKLGMK----------LEGVDP-QHPSMYFVL 390

  Fly   599 TILEIKGYKALMSYEGFDTDSHDFWVNLCNAEVHSVGWCATRGKPLIPPRTIEHKYKDWKDFLVG 663
            |:.|:.||:..:.::|: ::.||||||..:.::|..||....|..|.||:..:.:...|..:|  
  Rat   391 TVAEVCGYRLRLHFDGY-SECHDFWVNANSPDIHPAGWFEKTGHKLQPPKGYKEEEFSWSQYL-- 452

  Fly   664 RLSGARTLPSN-FYNKINDSLQSRFRLGLNLECVDKDRISQVRLATVTKIVGKRLFLRYFDSDD- 726
            |.:.|:..|.: |.::.:......|::|:.||.||:...|.|.:|:||.:|..|..:.:.|.|| 
  Rat   453 RSTKAQAAPKHLFVSQSHSPPPVGFQVGMKLEAVDRMNPSLVCVASVTDVVASRFLVHFDDWDDT 517

  Fly   727 -GFWCHEDSPIIHPVGWATTVGHNLAAPQDYLERMLAGREAMIEVHEDDATIELFKMNFTFDEYY 790
             .:||...||.||||||....|..|..||||                                  
  Rat   518 YDYWCDASSPYIHPVGWCQKQGKPLTPPQDY---------------------------------- 548

  Fly   791 SDGKTNSFVEGMKLEAVDPLNLSSICPATVMAVLKFGYMMIRIDSYQPDASGSDWFCYHEKSPCI 855
                                                           ||                
  Rat   549 -----------------------------------------------PD---------------- 550

  Fly   856 FPAGFCSVNNISVTPPNGYDSRTFTWEGYLRDTGAVAAGQHLFHRIIPDHGFEVGMSLECADLMD 920
             |..||                   ||.||.:||..|.....| ::.|.|.|.|.|.||..|..:
  Rat   551 -PDSFC-------------------WEKYLEETGTSAVPTWAF-KVRPPHSFLVNMKLEAVDRRN 594

  Fly   921 PRLVCVATVARVVGRLLKVHFDGWTDEYDQWLDCESADIYPVGWCVLVNHKLEGPPRVAHQQAPK 985
            |.|:.||:|..|....:|:|||||:..||.|:|.:..||:|.|||....|.||.|.|.....:..
  Rat   595 PALIRVASVEDVEDHRIKLHFDGWSHNYDFWIDADHPDIHPAGWCSKTGHPLEPPLRPRESSSAS 659

  Fly   986 PAPKPKIQRKRKPKKGAAGGKTPTDNNTQSVKSRTIALKTTPHLPKLSIKLELKPEHHNAAFYEN 1050
            |...|.:..:..|.                       .||:.:                 :|:..
  Rat   660 PGGCPPLSHRSPPH-----------------------TKTSKY-----------------SFHHR 684

  Fly  1051 NQPEEEGDEEDPDADGDGDGS---TSH-------ISEQSTTQSSSDLIAGSGSGSGSASLVTLAT 1105
            ..|       .|..||.|..:   |:|       ::|::.::..::|       |.|.:......
  Rat   685 KCP-------TPGCDGSGHVTGKFTAHHCLSGCPLAERNQSRLKAEL-------SDSETTARKKN 735

  Fly  1106 GSNKTVKKST------------TKSP------APPTVGRKATSYIANSSATNNKYIPRLADIDSS 1152
            .||.:.:|..            .|.|      .||:|..::. :::.        :|..||...|
  Rat   736 QSNLSPRKKPRHQGRIGRPPKYRKMPDEDFQALPPSVVHQSL-FMST--------LPTHADRPLS 791

  Fly  1153 ---EPHLELVP----------DTWNVYDVSQFLRVNDCTAHCD---TFSRNKIDGKRLLQLTKDD 1201
               |.|.:|:|          ..|.:.:|..|  |...|...|   .|....|||:..|.||:.|
  Rat   792 VCWEQHCKLLPGVAGISASAVSKWTIEEVFGF--VQTLTGSEDQARLFKEEMIDGEAFLLLTQAD 854

  Fly  1202 IMPLLGMKVGPALKISDLIAQLK 1224
            |:.::.:|:||||||.:.|...|
  Rat   855 IVKIMSVKLGPALKIYNAILMFK 877

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SfmbtNP_001137821.1 MBT_dSfmbt_rpt1 564..672 CDD:439109 31/108 (29%)
MBT_dSfmbt_rpt2 674..753 CDD:439112 29/81 (36%)
MBT_dSfmbt_rpt3 798..904 CDD:439115 13/105 (12%)
MBT_dSfmbt_rpt4 905..976 CDD:439118 32/70 (46%)
SAM_Scm-like-4MBT 1160..1226 CDD:188979 25/78 (32%)
L3mbtl1XP_017447769.1 MBT_L3MBTL1_rpt1 357..465 CDD:439121 33/121 (27%)
MBT 472..564 CDD:459242 41/208 (20%)
MBT_L3MBTL1_rpt3 577..651 CDD:439127 34/73 (47%)
zf-C2HC 685..713 CDD:460240 7/34 (21%)
SAM_Scm-like-3MBT3,4 812..877 CDD:188981 23/66 (35%)

Return to query results.
Submit another query.