DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sfmbt and L3mbtl3

DIOPT Version :9

Sequence 1:NP_001137821.1 Gene:Sfmbt / 34709 FlyBaseID:FBgn0032475 Length:1243 Species:Drosophila melanogaster
Sequence 2:XP_003748714.1 Gene:L3mbtl3 / 309550 RGDID:1305474 Length:868 Species:Rattus norvegicus


Alignment Length:1099 Identity:227/1099 - (20%)
Similarity:373/1099 - (33%) Gaps:376/1099 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   237 MGTLNG-------NAFGNIMVSTENTSSKQMQRTYSTAKGANSTATTATCSASTSSALRSQRKTR 294
            :|||.|       |.||.:.|.|:.:..:.:::         :||||.....:...|..|...:|
  Rat    25 VGTLPGSDLKFRVNEFGALEVITDESEMESVKK---------ATATTTWMVPTAQDAPPSPLSSR 80

  Fly   295 KIEP----VNRPGLVL----KTPIAYRGNIDPSVIPIQKDGMAVCKRCGAIGVKHTFYTKSRRFC 351
            ...|    .:.||...    ||.:.:|......|     ||:..|:.|...|......: ...:|
  Rat    81 PAFPPAYWTSPPGCPTVFSEKTGVPFRLKEQSKV-----DGLQFCENCCQYGNGEECLS-GGNYC 139

  Fly   352 SMACARGELYSLVLNTKMEGDQATTSSPDPGAGSESADLPGDQQQSQSDIELDLHAAHIKNANYR 416
            |..|:|           ...|:......|.|..::..| |...::.:..:.|...:..       
  Rat   140 SQNCSR-----------RARDKDQKEDRDGGEDNDEED-PKCSRKKKPKLSLKADSKE------- 185

  Fly   417 FRITDQSKITQLNSFGEPMSMGGDAAANNVQMAADETIAALNGGAVGDATA--PGSTEEGAST-- 477
                |:.:..::.:..:...:.|...|...:.              ||:..  .|...:|..|  
  Rat   186 ----DEERDDEMENKQDGRILRGSQRARRKRR--------------GDSAVLKQGLPPKGKKTWC 232

  Fly   478 PNSYLSAAPTPKALRLFKDIYPQDDLPQIPKYERLPVPCPQMEKIISIRRRMYDPTHSYDWLPRL 542
            ..|||                                   :.||.:::..:::....|:.:    
  Rat   233 WASYL-----------------------------------EEEKAVAVPTKLFKEHQSFPY---- 258

  Fly   543 SKENFNAAPVTCFPHAPGCEVWDNLGVGMKVEVENTDCDSIEVIQPGQTPTSFWVATILEIKGYK 607
            :|..|.                    ||||:|..:.:..|:           :.|.|:.|:.||:
  Rat   259 NKNGFK--------------------VGMKLEGVDPEHQSV-----------YCVLTVAEVCGYR 292

  Fly   608 ALMSYEGFDTDSHDFWVNLCNAEVHSVGWCATRGKPLIPPRTIEHKYKDWKDFLVGRLSGARTLP 672
            ..:.::|: :|.:|||||....::|.||||...|..|.||:..:.:..:|:.:|  :...|:..|
  Rat   293 IKLHFDGY-SDCYDFWVNADALDIHPVGWCEKTGHKLRPPKGYKEEEFNWQSYL--KTCKAQAAP 354

  Fly   673 SNFYNKINDS-LQSRFRLGLNLECVDKDRISQVRLATVTKIVGKRLFLRYFDSDD---GFWCHED 733
            .:.:...|.: :.|.||:|:.||..||...|.:.:||||.:|..| ||.:||:.|   .:||..:
  Rat   355 KSLFENQNITVIPSGFRVGMKLEAADKKSPSIICVATVTDMVDNR-FLVHFDNWDESYDYWCESN 418

  Fly   734 SPIIHPVGWATTVGHNLAAPQDYLERMLAGREAMIEVHEDDATIELFKMNFTFDEYYSDGKTNSF 798
            ||.||||||                                                        
  Rat   419 SPHIHPVGW-------------------------------------------------------- 427

  Fly   799 VEGMKLEAVDPLNLSSICPATVMAVLKFGYMMIRIDSYQPDASGSDWFCYHEKSPCIFPAGFCSV 863
                                                            |...:...|.|.|:..|
  Rat   428 ------------------------------------------------CKEHRRTLITPPGYSHV 444

  Fly   864 NNISVTPPNGYDSRTFTWEGYLRDTGAVAAGQHLFHRIIPDHGFEVGMSLECADLMDPRLVCVAT 928
            .:             |:|:.||.:|.::.|....| ::.|.|||:..|.||..|..:|..:.|||
  Rat   445 KH-------------FSWDKYLEETNSLPAPARAF-KVKPPHGFQKKMKLEAVDKRNPLFIRVAT 495

  Fly   929 VARVVGRLLKVHFDGWTDEYDQWLDCESADIYPVGWCVLVNHKLEGPPRVAHQQAPK-------- 985
            ||......:|||||||:..||.|:|.:|.||:|||||....|.|:.|...|....|.        
  Rat   496 VADTDDHRIKVHFDGWSSCYDYWIDADSPDIHPVGWCSKTGHPLQAPLSPAELMEPSETGGCPTL 560

  Fly   986 ----------------------PAPKPKIQRKRKPKKGAAGGKTP----------TDNN------ 1012
                                  |..:..:.:.|......:|..||          ||.|      
  Rat   561 GCRGVGHFKKSRYLGTQSGANCPYSEINLSKDRIFPDRLSGEITPSSFSFPRSKRTDTNESSSSP 625

  Fly  1013 -----------TQSVKSRTIALKTTPHL------PKLSIKLELKPEHHNAAFYENNQPEEEGDEE 1060
                       ..|.|.:...:||:...      |..|::....|:.   |......|:.:..::
  Rat   626 ETRDQHANNVKEDSEKKKENEVKTSAEAKVVREEPTPSVQQTQPPQQ---ALKAPQAPQIQPAQQ 687

  Fly  1061 DPDADGDGDGSTSHISEQSTTQSSSDLIAGSGSGSGSASLVTLATGSNKTVKKSTTKSP------ 1119
            .|.|.          ..|.|.|.:..  |.....:..|.....|..::.|.:::....|      
  Rat   688 APQAP----------QAQPTQQQAQQ--AQQAPQAPQAQPAPQAPQTHPTQQQAQQAQPTQQQAQ 740

  Fly  1120 -APPTVGRKATSYIANSSAT-----------------NNKYIPRLADIDSSEPHLELVPDTWNVY 1166
             |.||..::|.......||.                 .:|.:|.:|.|.:|.      ...|:..
  Rat   741 QAQPTQQQQAQQQAQRRSAVFLSFKPPIPCLPLRWEQQSKLLPTVAGIPASR------VSKWSTD 799

  Fly  1167 DVSQFLR-VNDCTAHCDTFSRNKIDGKRLLQLTKDDIMPLLGMKVGPALKISDLIAQLK 1224
            :||:|:: :..|..|...|...:|||:..|.:|:.||:.::.:|:||||||.:.|...|
  Rat   800 EVSEFIQSLPGCEEHGKVFKDEQIDGEAFLLMTQTDIVKIMSIKLGPALKIFNSILMFK 858

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SfmbtNP_001137821.1 MBT 542..647 CDD:214723 27/104 (26%)
MBT 658..753 CDD:214723 34/98 (35%)
MBT 767..871 CDD:214723 5/103 (5%)
MBT 882..975 CDD:214723 40/92 (43%)
TonB_N <975..1040 CDD:292650 17/127 (13%)
SAM_Scm-like-4MBT 1160..1226 CDD:188979 23/66 (35%)
SAM 1160..1224 CDD:197735 22/64 (34%)
L3mbtl3XP_003748714.1 MBT 235..331 CDD:214723 33/166 (20%)
MBT 342..438 CDD:214723 36/202 (18%)
MBT 450..542 CDD:214723 40/92 (43%)
SAM_Scm-like-3MBT3,4 793..858 CDD:188981 22/64 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166343697
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.840

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