DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sfmbt and Scmh1

DIOPT Version :9

Sequence 1:NP_001137821.1 Gene:Sfmbt / 34709 FlyBaseID:FBgn0032475 Length:1243 Species:Drosophila melanogaster
Sequence 2:NP_001153102.1 Gene:Scmh1 / 29871 MGIID:1352762 Length:706 Species:Mus musculus


Alignment Length:642 Identity:162/642 - (25%)
Similarity:234/642 - (36%) Gaps:215/642 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   775 ATIELFKMNFTFDEYYSDGKTNSFVEGMKLEAVDPLNLSSICPATVMAVLKFGYMMIRIDSYQPD 839
            |.:..||.::|       ..:|.|...|||||.||.|.:|.|.|||:. |....:.:|:|     
Mouse    42 APVHCFKQSYT-------PPSNEFKISMKLEAQDPRNTTSTCIATVVG-LTGARLRLRLD----- 93

  Fly   840 ASGSD-----WFCYHEKSPCIFPAGFCSVNNISVTPPNGYDSRTFTWEGYLRDT--GAVAAGQHL 897
              |||     |.......  |.|.|.|..|...:.||.|:.....:|..:|..|  ||..|...:
Mouse    94 --GSDNKNDFWRLVDSSE--IQPIGNCEKNGGMLQPP
LGFRLNASSWPMFLLKTLNGAEMAPIKI 154

  Fly   898 FHR--IIPDHG-FEVGMSLECADLMDPRLVCVATVARVVGRLLKVHFDGWTDEYDQWLDCESADI 959
            ||:  ..|.|. |::||.||..|..:|..:|.||:..|.|..:.|.||||...:|.|...:|.||
Mouse   155 FHKEPPSPSHNFFKMGMKLEAVDRKNPHFICPATIGEVRGAEVLVTFDGWRGAFDYWCRFDSRDI 219

  Fly   960 YPVGWCVLVNHKLEGP-PRVAHQQAPKPA-----PKPKI------------QRKRKPKKGAAGGK 1006
            :|||||.|....|:.| .:|...:.|.|:     .||.|            ||.|||  |...|:
Mouse   220 FPVGWCSLTGDNLQPPGTKVVIPKNPSPSSDVSTEKPSIHSTKTVLEHQPGQRGRKP--GKKRGR 282

  Fly  1007 TP---------------------------------------------------TDNNT------- 1013
            ||                                                   .|.:|       
Mouse   283 TPKILIPHPTSTPSKSAEPLKFPKKRGPKPGSKRKPRTLLSPPPTSPTTSTPEPDTSTVPQDAAT 347

  Fly  1014 ---QSVKSRTIAL------KTTPHLPKLSIKLELKPEH----------------------HNAAF 1047
               .::::.|:.:      .|.|||.|.  |::..|:|                      |....
Mouse   348 VPSSAMQAPTVCIYLNKSGSTGPHLDKK--KIQQLPDHFGPARASVVLQQAVQACIDCAYHQKTV 410

  Fly  1048 YENNQPEEEG-------DEEDPDADGDGDGSTSHI-----------------SEQSTTQSSSDLI 1088
            :...:....|       |.|....:.....|.:::                 ..|..||:...|.
Mouse   411 FSFLKQGHGGEVISAVFDREQHTLNLPAVNSITYVLRFLEKLCHNLRSDNLFGNQPFTQTHLSLT 475

  Fly  1089 A------------GSGSGSGSASLVTLATGS---NKTVKK----STTKS-------PAPPTVGR- 1126
            |            |.....|::...:|.|.|   :..:|.    ||:::       |..|:.|. 
Mouse   476 ATEYNHNHDRYLPGETFVLGNSLARSLETHSDLMDSALKPANLVSTSQNLRTPGYRPLLPSCGLP 540

  Fly  1127 ----KATSYIANSSATNNKYIPRLADIDS---------SEPHLE---------LVPDTWNVYDVS 1169
                .|...:.:......|...|  |::|         |:.|||         ..|.:|.|.||.
Mouse   541 LSTVSAVRRLCSKGVLKGKKERR--DVESFWKLNHSPGSDRHLESRDPPRLSGRDPSSWTVEDVM 603

  Fly  1170 QFLRVND--CTAHCDTFSRNKIDGKRLLQLTKDDIMPLLGMKVGPALKISDLIAQLK 1224
            ||:|..|  ..:|.|.|.:::||||.||.|..|.:|..:|:|:|||||:|..|.:||
Mouse   604 QFVREADPQLGSHADLFRKHEIDGKALLLLRSDMMMKYMGLKLGPALKLSFHIDRLK 660

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SfmbtNP_001137821.1 MBT 542..647 CDD:214723
MBT 658..753 CDD:214723
MBT 767..871 CDD:214723 31/100 (31%)
MBT 882..975 CDD:214723 38/97 (39%)
TonB_N <975..1040 CDD:292650 25/149 (17%)
SAM_Scm-like-4MBT 1160..1226 CDD:188979 32/67 (48%)
SAM 1160..1224 CDD:197735 30/65 (46%)
Scmh1NP_001153102.1 MBT 1 28..126 31/100 (31%)
MBT 31..126 CDD:214723 31/100 (31%)
MBT 2 134..235 39/100 (39%)
MBT 137..235 CDD:214723 38/97 (39%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 233..350 18/118 (15%)
DUF3588 357..465 CDD:288954 14/109 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 576..595 4/18 (22%)
SAM_Scm 591..661 CDD:188977 32/70 (46%)
SAM 594..661 CDD:197735 32/67 (48%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167839858
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3766
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.740

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