DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sfmbt and Scmh1

DIOPT Version :10

Sequence 1:NP_001137821.1 Gene:Sfmbt / 34709 FlyBaseID:FBgn0032475 Length:1243 Species:Drosophila melanogaster
Sequence 2:NP_001153102.1 Gene:Scmh1 / 29871 MGIID:1352762 Length:706 Species:Mus musculus


Alignment Length:642 Identity:162/642 - (25%)
Similarity:234/642 - (36%) Gaps:215/642 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   775 ATIELFKMNFTFDEYYSDGKTNSFVEGMKLEAVDPLNLSSICPATVMAVLKFGYMMIRIDSYQPD 839
            |.:..||.::|       ..:|.|...|||||.||.|.:|.|.|||:. |....:.:|:|     
Mouse    42 APVHCFKQSYT-------PPSNEFKISMKLEAQDPRNTTSTCIATVVG-LTGARLRLRLD----- 93

  Fly   840 ASGSD-----WFCYHEKSPCIFPAGFCSVNNISVTPPNGYDSRTFTWEGYLRDT--GAVAAGQHL 897
              |||     |.......  |.|.|.|..|...:.||.|:.....:|..:|..|  ||..|...:
Mouse    94 --GSDNKNDFWRLVDSSE--IQPIGNCEKNGGMLQPPLGFRLNASSWPMFLLKTLNGAEMAPIKI 154

  Fly   898 FHR--IIPDHG-FEVGMSLECADLMDPRLVCVATVARVVGRLLKVHFDGWTDEYDQWLDCESADI 959
            ||:  ..|.|. |::||.||..|..:|..:|.||:..|.|..:.|.||||...:|.|...:|.||
Mouse   155 FHKEPPSPSHNFFKMGMKLEAVDRKNPHFICPATIGEVRGAEVLVTFDGWRGAFDYWCRFDSRDI 219

  Fly   960 YPVGWCVLVNHKLEGP-PRVAHQQAPKPA-----PKPKI------------QRKRKPKKGAAGGK 1006
            :|||||.|....|:.| .:|...:.|.|:     .||.|            ||.|||  |...|:
Mouse   220 FPVGWCSLTGDNLQPPGTKVVIPKNPSPSSDVSTEKPSIHSTKTVLEHQPGQRGRKP--GKKRGR 282

  Fly  1007 TP---------------------------------------------------TDNNT------- 1013
            ||                                                   .|.:|       
Mouse   283 TPKILIPHPTSTPSKSAEPLKFPKKRGPKPGSKRKPRTLLSPPPTSPTTSTPEPDTSTVPQDAAT 347

  Fly  1014 ---QSVKSRTIAL------KTTPHLPKLSIKLELKPEH----------------------HNAAF 1047
               .::::.|:.:      .|.|||.|.  |::..|:|                      |....
Mouse   348 VPSSAMQAPTVCIYLNKSGSTGPHLDKK--KIQQLPDHFGPARASVVLQQAVQACIDCAYHQKTV 410

  Fly  1048 YENNQPEEEG-------DEEDPDADGDGDGSTSHI-----------------SEQSTTQSSSDLI 1088
            :...:....|       |.|....:.....|.:::                 ..|..||:...|.
Mouse   411 FSFLKQGHGGEVISAVFDREQHTLNLPAVNSITYVLRFLEKLCHNLRSDNLFGNQPFTQTHLSLT 475

  Fly  1089 A------------GSGSGSGSASLVTLATGS---NKTVKK----STTKS-------PAPPTVGR- 1126
            |            |.....|::...:|.|.|   :..:|.    ||:::       |..|:.|. 
Mouse   476 ATEYNHNHDRYLPGETFVLGNSLARSLETHSDLMDSALKPANLVSTSQNLRTPGYRPLLPSCGLP 540

  Fly  1127 ----KATSYIANSSATNNKYIPRLADIDS---------SEPHLE---------LVPDTWNVYDVS 1169
                .|...:.:......|...|  |::|         |:.|||         ..|.:|.|.||.
Mouse   541 LSTVSAVRRLCSKGVLKGKKERR--DVESFWKLNHSPGSDRHLESRDPPRLSGRDPSSWTVEDVM 603

  Fly  1170 QFLRVND--CTAHCDTFSRNKIDGKRLLQLTKDDIMPLLGMKVGPALKISDLIAQLK 1224
            ||:|..|  ..:|.|.|.:::||||.||.|..|.:|..:|:|:|||||:|..|.:||
Mouse   604 QFVREADPQLGSHADLFRKHEIDGKALLLLRSDMMMKYMGLKLGPALKLSFHIDRLK 660

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SfmbtNP_001137821.1 MBT_dSfmbt_rpt1 564..672 CDD:439109
MBT_dSfmbt_rpt2 674..753 CDD:439112
MBT_dSfmbt_rpt3 798..904 CDD:439115 37/114 (32%)
MBT_dSfmbt_rpt4 905..976 CDD:439118 31/72 (43%)
SAM_Scm-like-4MBT 1160..1226 CDD:188979 32/67 (48%)
Scmh1NP_001153102.1 MBT_SCMH1_rpt1 27..157 CDD:439095 41/131 (31%)
MBT 1 28..126 31/100 (31%)
MBT 2 134..235 39/100 (39%)
MBT_SCMH1_rpt2 162..236 CDD:439098 31/73 (42%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 233..350 18/118 (15%)
RBR 270..319 CDD:465382 9/50 (18%)
SLED 357..465 CDD:463469 14/109 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 576..595 4/18 (22%)
SAM_Scm 591..661 CDD:188977 32/70 (46%)
Blue background indicates that the domain is not in the aligned region.

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