DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sfmbt and SCMH1

DIOPT Version :9

Sequence 1:NP_001137821.1 Gene:Sfmbt / 34709 FlyBaseID:FBgn0032475 Length:1243 Species:Drosophila melanogaster
Sequence 2:NP_001381240.1 Gene:SCMH1 / 22955 HGNCID:19003 Length:670 Species:Homo sapiens


Alignment Length:640 Identity:161/640 - (25%)
Similarity:230/640 - (35%) Gaps:215/640 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   775 ATIELFKMNFTFDEYYSDGKTNSFVEGMKLEAVDPLNLSSICPATVMAVLKFGYMMIRIDSYQPD 839
            |.:..||.::|       ..:|.|...|||||.||.|.:|.|.|||:. |....:.:|:|     
Human    52 APVHCFKQSYT-------PPSNEFKISMKLEAQDPRNTTSTCIATVVG-LTGARLRLRLD----- 103

  Fly   840 ASGSD-----WFCYHEKSPCIFPAGFCSVNNISVTPPNGYDSRTFTWEGYLRDT--GAVAAGQHL 897
              |||     |...  .|..|.|.|.|..|...:.||.|:.....:|..:|..|  ||..|...:
Human   104 --GSDNKNDFWRLV--DSAEIQPIGNCEKNGGMLQPP
LGFRLNASSWPMFLLKTLNGAEMAPIRI 164

  Fly   898 FHR--IIPDHG-FEVGMSLECADLMDPRLVCVATVARVVGRLLKVHFDGWTDEYDQWLDCESADI 959
            ||:  ..|.|. |::||.||..|..:|..:|.||:..|.|..:.|.||||...:|.|...:|.||
Human   165 FHKEPPSPSHNFFKMGMKLEAVDRKNPHFICPATIGEVRGSEVLVTFDGWRGAFDYWCRFDSRDI 229

  Fly   960 YPVGWCVLVNHKLEGP-PRVAHQQAPKPA-----PKPKI-------------QRKRKPKKGAAGG 1005
            :|||||.|....|:.| .:|...:.|.||     .||.|             ||.|||  |...|
Human   230 FPVGWCSLTGDNLQPPGTKVVIPKNPYPASDVNTEKPSIHSSTKTVLEHQPGQRGRKP--GKKRG 292

  Fly  1006 KTP---------------------------------------------------TDNNT------ 1013
            :||                                                   .|.:|      
Human   293 RTPKTLISHPISAPSKTAEPLKFPKKRGPKPGSKRKPRTLLNPPPASPTTSTPEPDTSTVPQDAA 357

  Fly  1014 ----QSVKSRTIAL------KTTPHLPKLSIKLELKPEH----------------------HNAA 1046
                .::::.|:.:      .|.|||.|.  |::..|:|                      |...
Human   358 TIPSSAMQAPTVCIYLNKNGSTGPHLDKK--KVQQLPDHFGPARASVVLQQAVQACIDCAYHQKT 420

  Fly  1047 FYENNQPEEEG-------DEEDPDADGDGDGSTSHI-----------------SEQSTTQSSSDL 1087
            .:...:....|       |.|....:.....|.:::                 ..|..||:...|
Human   421 VFSFLKQGHGGEVISAVFDREQHTLNLPAVNSITYVLRFLEKLCHNLRSDNLFGNQPFTQTHLSL 485

  Fly  1088 IAGSGSGSGSASLVTLATGSNKTVKKSTTKSPAPPTVGRKATSYIANSSATNNKYIPRLA----- 1147
            .|...|.|....|    .|....:..|..:|..|.:....:.|...|..:|:.::.|.|:     
Human   486 TAIEYSHSHDRYL----PGETFVLGNSLARSLEPHSDSMDSASNPTNLVSTSQRHRPLLSSCGLP 546

  Fly  1148 -----------------------DIDS---------SEPHLE---------LVPDTWNVYDVSQF 1171
                                   |::|         |:.:||         ..|.:|.|.||.||
Human   547 PSTASAVRRLCSRGVLKGSNERRDMESFWKLNRSPGSDRYLESRDASRLSGRDPSSWTVEDVMQF 611

  Fly  1172 LRVND--CTAHCDTFSRNKIDGKRLLQLTKDDIMPLLGMKVGPALKISDLIAQLK 1224
            :|..|  ...|.|.|.:::||||.||.|..|.:|..:|:|:|||||:|..|.:||
Human   612 VREADPQLGPHADLFRKHEIDGKALLLLRSDMMMKYMGLKLGPALKLSYHIDRLK 666

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SfmbtNP_001137821.1 MBT 542..647 CDD:214723
MBT 658..753 CDD:214723
MBT 767..871 CDD:214723 32/100 (32%)
MBT 882..975 CDD:214723 38/97 (39%)
TonB_N <975..1040 CDD:292650 26/150 (17%)
SAM_Scm-like-4MBT 1160..1226 CDD:188979 32/67 (48%)
SAM 1160..1224 CDD:197735 30/65 (46%)
SCMH1NP_001381240.1 MBT 41..136 CDD:214723 32/100 (32%)
MBT 147..245 CDD:214723 38/97 (39%)
PHA03247 <243..367 CDD:223021 19/125 (15%)
RBR 281..334 CDD:407329 9/54 (17%)
SLED 368..476 CDD:403384 14/109 (13%)
SAM_Scm 597..667 CDD:188977 32/70 (46%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165149807
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3766
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.740

Return to query results.
Submit another query.