DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sfmbt and sor-3

DIOPT Version :9

Sequence 1:NP_001137821.1 Gene:Sfmbt / 34709 FlyBaseID:FBgn0032475 Length:1243 Species:Drosophila melanogaster
Sequence 2:NP_508090.2 Gene:sor-3 / 180391 WormBaseID:WBGene00015429 Length:531 Species:Caenorhabditis elegans


Alignment Length:523 Identity:107/523 - (20%)
Similarity:174/523 - (33%) Gaps:183/523 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   515 PCPQ--MEKIISIRRRMYDP------THSYDWLPRL-SKENFNAAPVTCFPH------------A 558
            ||..  ||.|:     |:|.      .|:..|:... ::.||       ||.            |
 Worm    12 PCDSDLMESIL-----MFDEPISDILAHNKLWISHARTRSNF-------FPQEGRHISNQHTEAA 64

  Fly   559 PGCEVW---DNLGVGMKVEVENTDCDSIEVIQPGQTPTSFWVATILEIKGYKALMSYEGFDTDSH 620
            ...::|   .||.|.:|.:.:...|..:.     :.|.:.:||..|| .|.:..:..|..|    
 Worm    65 TSLKMWMLSKNLVVIVKRKDDIFPCKILT-----RNPENLFVARFLE-SGKEKHIQVEYSD---- 119

  Fly   621 DFWVNLCNAEVH-SVGWCATRGKPLIPPRTIEHKYKDWKDFLVGRLSGARTLPSNFYNKINDSLQ 684
               :.:..:|:. ::..|    :.|||.|       :|.||.:.| ...:..|     .....|.
 Worm   120 ---IIMTRSELEKALPLC----QHLIPAR-------NWDDFYIIR-DFEKATP-----YFEQGLS 164

  Fly   685 SRFRLGLNLECVDKDRISQVRLATVTKIVGKRLFLRYFDSDDGF--WCHEDSPIIHPVGWATTVG 747
            :..:.|...|...:|......:|||.|.....|.:.|    ..|  |.|..||..|.:||    |
 Worm   165 ALVKPGQQFELQLEDAPDFYVMATVVKNYRGFLLVEY----QNFKRWIHMLSPYCHEIGW----G 221

  Fly   748 HNLAAPQDYLERMLAGREAMIEVHEDDATIELFKMNFTFDEYYSDGKTNSFVEGMKLEAVDPLNL 812
            .|  ..|:||:|....|...:     |....|.|.:           ||     .||.||..:..
 Worm   222 KN--EKQEYLKRGPYNRHMNV-----DLVAGLVKQS-----------TN-----QKLGAVPEIVF 263

  Fly   813 SSICPATVMAVLKFGYMMIRIDSYQP----DASGSDWFCYHEKSPCIFPAGFCSVN----NISV- 868
            .:.||           :..||..|..    |.....::..|:.:     ...|..|    |||: 
 Worm   264 RNNCP-----------VPHRIPEYSACVYLDLDQKRFYFAHKVT-----TKTCRNNRHFFNISIG 312

  Fly   869 --TPPNGYDSRTFTWEGYLRDTGAVAAGQHLFH-RIIPDHGFEVGMSLECADLMDPRLVCVATVA 930
              ...:..::|.:.:              |::| ||:|   :.|...:|...::.|.:       
 Worm   313 KNLVTSKQNNRPYEF--------------HVYHPRILP---YSVAKRMEVQIILPPDV------- 353

  Fly   931 RVVGRLL--KVHFDGWTDEYDQWLDCESADIYPVGWCVLVNHKLEGPPRVAHQQAPKPAPKPKIQ 993
                :||  :.:.||:...|     |...|                    .|:.:.:..|.|||.
 Worm   354 ----KLLPDESNLDGYLRTY-----CNPCD--------------------KHKTSDRVQPSPKIA 389

  Fly   994 RKR 996
            :|:
 Worm   390 KKK 392

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SfmbtNP_001137821.1 MBT 542..647 CDD:214723 23/121 (19%)
MBT 658..753 CDD:214723 24/96 (25%)
MBT 767..871 CDD:214723 21/114 (18%)
MBT 882..975 CDD:214723 15/95 (16%)
TonB_N <975..1040 CDD:292650 6/22 (27%)
SAM_Scm-like-4MBT 1160..1226 CDD:188979
SAM 1160..1224 CDD:197735
sor-3NP_508090.2 MBT <168..220 CDD:302657 15/55 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR12247
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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