DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sfmbt and lin-61

DIOPT Version :9

Sequence 1:NP_001137821.1 Gene:Sfmbt / 34709 FlyBaseID:FBgn0032475 Length:1243 Species:Drosophila melanogaster
Sequence 2:NP_001122501.1 Gene:lin-61 / 172467 WormBaseID:WBGene00003041 Length:612 Species:Caenorhabditis elegans


Alignment Length:528 Identity:145/528 - (27%)
Similarity:232/528 - (43%) Gaps:110/528 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   519 MEKIISIRR------RMYDPTHSYD-WLPRLSKENFNAAPVTCFPHAPGCEVWDNL--------- 567
            |.:.:.|.|      |..|.|:.:: :|.:..|...:..||..|..        ||         
 Worm   122 MSEFLKIVRANKKSDRKLDKTYLWESYLHQFEKGKTSFIPVEAFNR--------NLTVNFNECVK 178

  Fly   568 -GVGMKVEVENTD--CDSIEVIQPGQTPTSFWVATILEIKGYKALMSYEGFDTDSHDFWVNLCNA 629
             ||..:..|.:.|  ||||:|         .|.|.|.::.||:.|..:.|.||   .||:|:.:.
 Worm   179 EGVIFETVVHDYDKNCDSIQV---------RWFARIEKVCGYRVLAQFIGADT---KFWLNILSD 231

  Fly   630 EVHSVGWCATRGKPL-----IPPRTIEHKYK-DWKDF----LVGRLSGARTLPSNFYNKINDSLQ 684
            ::..:...|.....:     .||..|..:|: |..::    :.|.:.|..:|...|........:
 Worm   232 DMFGLANAAMSDPNMDKIVYAPPLAINEEYQNDMVNYVNNCIDGEIVGQTSLSPKFDEGKALLSK 296

  Fly   685 SRFRLGLNLECVDKDRISQVRLATVTKIVGKRLFL------------------RYFDSDDGFWCH 731
            .||::|..||.::....:::|:|.:.:|.|:|:.:                  :.|.|...:|..
 Worm   297 HRFKVGQRLELLNYSNSTEIRVARIQEICGRRMNVSITKKDFPESLPDADDDRQVFSSGSQYWID 361

  Fly   732 EDSPIIHPVGWATTVGHNLAAPQDYLERMLAGREAM-----IEVHEDDATIELFKMNFTFDEYYS 791
            |.|..|.|||:|...|:.|.|.::|:|......:|:     .....||.         |||:...
 Worm   362 EGSFFIFPVGFAAVNGYQLNAKKEYIEHTNKIAQAIKNGENPRYDSDDV---------TFDQLAK 417

  Fly   792 DGKT----NSFVEGMKLEAVDPL-----NLSSICPATVMAVLKF----GYMMIRIDSYQPDASGS 843
            |...    .....|.|.|.:|||     ||.      |.::|||    ||:::.:|.  |||. .
 Worm   418 DPIDPMIWRKVKVGQKFELIDPLAQQFNNLH------VASILKFCKTEGYLIVGMDG--PDAL-E 473

  Fly   844 DWFCYHEKSPCIFPAGFCSVNNISVTPPNGYDSRTFTWEGYLRDTGAVAAGQHLFHRIIPDH--- 905
            |.|..|..:..:||.|:....|:.:.||:.:.. ||.|:.||....|......|| :.:|..   
 Worm   474 DSFPIHINNTFMFPVGYAEKYNLELVPPDEFKG-TFRWDEYLEKESAETLPLDLF-KPMPSQERL 536

  Fly   906 -GFEVGMSLECADLMDPRLVCVATVARVVGRLLKVHFDGWTDEYDQWLDCESADIYPVGWCVLVN 969
             .|:||:.||.||:.:.:.:|.|||..|.|||:.|:||||.:|:|:..|.:|.||.|:|||...:
 Worm   537 DKFKVGLRLEAADMCENQFICPATVKSVHGRLINVNFDGWDEEFDELYDVDSHDILPIGWCEAHS 601

  Fly   970 HKLEGPPR 977
            :.|: ||:
 Worm   602 YVLQ-PPK 608

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SfmbtNP_001137821.1 MBT 542..647 CDD:214723 28/121 (23%)
MBT 658..753 CDD:214723 26/116 (22%)
MBT 767..871 CDD:214723 31/121 (26%)
MBT 882..975 CDD:214723 37/96 (39%)
TonB_N <975..1040 CDD:292650 2/3 (67%)
SAM_Scm-like-4MBT 1160..1226 CDD:188979
SAM 1160..1224 CDD:197735
lin-61NP_001122501.1 MBT 146..248 CDD:214723 29/121 (24%)
MBT 283..383 CDD:214723 24/99 (24%)
MBT 433..505 CDD:280910 26/80 (33%)
MBT 511..607 CDD:214723 37/97 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160167438
Domainoid 1 1.000 70 1.000 Domainoid score I6229
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S5675
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002222
OrthoInspector 1 1.000 - - otm14308
orthoMCL 1 0.900 - - OOG6_105853
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2614
SonicParanoid 1 1.000 - - X1465
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
98.720

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