DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sfmbt and Scml2

DIOPT Version :9

Sequence 1:NP_001137821.1 Gene:Sfmbt / 34709 FlyBaseID:FBgn0032475 Length:1243 Species:Drosophila melanogaster
Sequence 2:XP_006528733.1 Gene:Scml2 / 107815 MGIID:1340042 Length:1136 Species:Mus musculus


Alignment Length:442 Identity:113/442 - (25%)
Similarity:156/442 - (35%) Gaps:126/442 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   788 EYYSDGK---TNSFVEGMKLEAVDPLNLSSICPATVMAVLKFGYMMIRIDSYQPDASGSD----- 844
            ||:...|   ||.|..||||||.||.|:.|:|.|:|:.:.. ..:.:|:|       |||     
Mouse   167 EYFRQSKTPPTNEFKIGMKLEARDPRNIDSVCVASVIGITG-ARLRLRLD-------GSDNKNDF 223

  Fly   845 WFCYHEKSPCIFPAGFCSVNNISVTPPNGYDSRTFTWEGYLRD--TGAVAAGQHLFHRIIP---D 904
            |...  .|..|.|.|.|......:.||.||...|.:|..:|..  ||:..|....|....|   .
Mouse   224 WRLV--DSSDIQPVGTCEQGGDLLQPP
LGYTLNTSSWPMFLLRVLTGSELAPAVFFKEEPPRPLQ 286

  Fly   905 HGFEVGMSLECADLMDPRLVCVATVARVVGRLLKVHFDGWTDEYDQWLDCESADIYPVGWCVLVN 969
            :.|.|||.:|..|..:|.::|.||:..|.|..|.:.||||:..:|.|.|.:|.||:|||||.|..
Mouse   287 NNFIVGMKIEAVDRKNPFMICPATIGAVCGDQLHITFDGWSGAFDYWCDYDSRDIFPVGWCRLTG 351

  Fly   970 HKLEGPPRVA----------------------HQQAPKPAPKPKI--------QRKRKPKKGAAG 1004
            ..|:.|.::.                      .::||:.|.:|..        .|..|..:|.|.
Mouse   352 DVLQPPGKIVEKRPRRKRRTRLWRLRTALLGNEEEAPEAAEEPGTSVLTFGDENRTLKDCRGEAA 416

  Fly  1005 GKTPTDNNTQSVKSRTIA--------------LKTTPHLPKLSIKLELKPEHHNAAFYENNQPEE 1055
            .:..|...|...::||:.              :|..        |.|.:|..|:.......:|..
Mouse   417 EEPGTSAFTFGDENRTLKDCQGGWKKPKGRGFIKPG--------KDETRPGKHDQGAPAGKKPRG 473

  Fly  1056 EG------DEEDPDAD-----------------------------GDGDGSTSHISEQSTTQSSS 1085
            .|      ||..|..|                             ||.........:..||..:.
Mouse   474 RGFTQPLEDEARPGRDVQVAPAEKKRKGKTVTTPWTEDPRLFADQGDAPAEKKRKGKTVTTPWTE 538

  Fly  1086 D--LIAGSGSGSGSASLVTLATGSNKTVKKSTTKSP--------APPTVGRK 1127
            |  |.|..|.......      ...|||....|:.|        ||....||
Mouse   539 DPRLFADQGDAPAEKK------RKGKTVTTPWTEDPRLFADQGAAPAEKKRK 584

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SfmbtNP_001137821.1 MBT 542..647 CDD:214723
MBT 658..753 CDD:214723
MBT 767..871 CDD:214723 30/90 (33%)
MBT 882..975 CDD:214723 36/97 (37%)
TonB_N <975..1040 CDD:292650 16/108 (15%)
SAM_Scm-like-4MBT 1160..1226 CDD:188979
SAM 1160..1224 CDD:197735
Scml2XP_006528733.1 MBT 153..248 CDD:214723 30/90 (33%)
MBT 266..357 CDD:214723 35/90 (39%)
PTZ00121 <403..>742 CDD:173412 36/196 (18%)
SLED 877..986 CDD:371916
SAM_Scm 1062..1132 CDD:188977
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167839866
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3766
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

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