DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sfmbt and SCML2

DIOPT Version :9

Sequence 1:NP_001137821.1 Gene:Sfmbt / 34709 FlyBaseID:FBgn0032475 Length:1243 Species:Drosophila melanogaster
Sequence 2:NP_006080.1 Gene:SCML2 / 10389 HGNCID:10581 Length:700 Species:Homo sapiens


Alignment Length:697 Identity:161/697 - (23%)
Similarity:233/697 - (33%) Gaps:272/697 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   775 ATIELFKMNFTFDEYYSD----------------GKTNSFVEGMKLEAVDPLNLSSICPATVMAV 823
            :|..:.:.:|.::||..:                ...|.|..||||||.||.|.:|:|.|||:.:
Human    24 STSSVQRDDFHWEEYLKETGSISAPSECFRQSQIPPVNDFKVGMKLEARDPRNATSVCIATVIGI 88

  Fly   824 LKFGYMMIRIDSYQPDASGSD-----WFCYHEKSPCIFPAGFCSVNNISVTPPNGYDSRTFTWEG 883
            .. ..:.:|:|       |||     |...  .||.|.|.|.|......:.||.||...|.:|..
Human    89 TG-ARLRLRLD-------GSDNRNDFWRLV--DSPDIQPVGTCEKEGDLLQPP
LGYQMNTSSWPM 143

  Fly   884 YLRDT--GAVAAGQHLFHRIIPD---HGFEVGMSLECADLMDPRLVCVATVARVVGRLLKVHFDG 943
            :|..|  |:..|...||.:..|.   :.|:|||.||..|..:|.|:|.||:..|.|..:.:.|||
Human   144 FLLKTLNGSEMASATLFKKEPPKPPLNNFKVGMKLEAIDKKNPYLICPATIGDVKGDEVHITFDG 208

  Fly   944 WTDEYDQWLDCESADIYPVGWCVLVNHKLEGP----------------PRVAHQQA--------- 983
            |:..:|.|...:|.||:|.|||.|....|:.|                |..|.|.:         
Human   209 WSGAFDYWCKYDSRDIFPAGWCRLTGDVLQPPGTSVPIVKNIAKTESSPSEASQHSMQSPQKTTL 273

  Fly   984 ---------------PKPAPKPK--------IQRKRKPKKGAAGGKTPT--DNNTQSVKSRT--- 1020
                           |.|...||        ..||:.|..|......|.  ..:..|:||.|   
Human   274 ILPTQQVRRSSRIKPPGPTAVPKRSSSVKNITPRKKGPNSGKKEKPLPVICSTSAASLKSLTRDR 338

  Fly  1021 -------------IALKTT-----------PHL-PK-------------------------LSIK 1035
                         |.:.|.           ||| ||                         :...
Human   339 GMLYKDVASGPCKIVMSTVCVYVNKHGNFGPHLDPKRIQQLPDHFGPGPVNVVLRRIVQACVDCA 403

  Fly  1036 LE-------LKPEH--------------------------------------------------- 1042
            ||       |||::                                                   
Human   404 LETKTVFGYLKPDNRGGEVITASFDGETHSIQLPPVNSASFALRFLENFCHSLQCDNLLSSQPFS 468

  Fly  1043 ------HNAAFYENNQPEEE--------------------------------GDEEDP-DADGDG 1068
                  |::|.::.||..:|                                ..|.:| .|.|..
Human   469 SSRGHTHSSAEHDKNQSAKEDVTERQSTKRSPQQTVPYVVPLSPKLPKTKEYASEGEPLFAGGSA 533

  Fly  1069 DGSTSHISEQSTTQSSSDLIAGSGSGSGSASLVTLATGSNKTVKKSTTKSPAPPTVG-------- 1125
            .....::||.|   .||.|.:|:.......:.:.:.|..::...:|...:.:.|.||        
Human   534 IPKEENLSEDS---KSSSLNSGNYLNPACRNPMYIHTSVSQDFSRSVPGTTSSPLVGDISPKSSP 595

  Fly  1126 --------RK--ATSYIANSSATNNKYIPRLADIDSSEPHLELVPDTWNVYDVSQFLRVNDCTAH 1180
                    ||  |.||||         :|   |....:......|.||:|.:|.||::..|....
Human   596 HEVKFQMQRKSEAPSYIA---------VP---DPSVLKQGFSKDPSTWSVDEVIQFMKHTDPQIS 648

  Fly  1181 ---CDTFSRNKIDGKRLLQLTKDDIMPLLGMKVGPALKISDLIAQLK 1224
               .|.|.:::||||.|..|..|.:|..:|:|:|||||:...|.:||
Human   649 GPLADLFRQHEIDGKALFLLKSDVMMKYMGLKLGPALKLCYYIEKLK 695

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SfmbtNP_001137821.1 MBT 542..647 CDD:214723
MBT 658..753 CDD:214723
MBT 767..871 CDD:214723 32/116 (28%)
MBT 882..975 CDD:214723 36/97 (37%)
TonB_N <975..1040 CDD:292650 27/174 (16%)
SAM_Scm-like-4MBT 1160..1226 CDD:188979 28/68 (41%)
SAM 1160..1224 CDD:197735 26/66 (39%)
SCML2NP_006080.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..33 1/8 (13%)
MBT 1 33..131 31/107 (29%)
MBT 36..131 CDD:214723 30/104 (29%)
MBT 2 139..240 37/100 (37%)
MBT 142..240 CDD:214723 36/97 (37%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 253..320 11/66 (17%)
DUF3588 356..465 CDD:288954 11/108 (10%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 466..550 14/86 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 575..594 4/18 (22%)
SAM_Scm 625..696 CDD:188977 28/71 (39%)
SAM 628..696 CDD:197735 28/68 (41%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165149815
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3766
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.740

Return to query results.
Submit another query.