DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5122 and Cpt1a

DIOPT Version :9

Sequence 1:NP_609601.1 Gene:CG5122 / 34703 FlyBaseID:FBgn0032471 Length:1263 Species:Drosophila melanogaster
Sequence 2:NP_113747.2 Gene:Cpt1a / 25757 RGDID:2396 Length:773 Species:Rattus norvegicus


Alignment Length:628 Identity:186/628 - (29%)
Similarity:306/628 - (48%) Gaps:61/628 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   661 KKPELKKF----PALP---LKQSIASYLSSIEPFLNEEELKVEQKVAKKFVDNEGAKLQQLLEEE 718
            :||.|..|    |.||   :|.:::.||.|:.|.:.||:.:....:|:.|..|.|.|||..|:.:
  Rat   160 RKPMLYSFQTSLPRLPVPAVKDTVSRYLESVRPLMKEEDFQRMTALAQDFAVNLGPKLQWYLKLK 224

  Fly   719 AEGTDNWLTPRWTRSAYLTYQAPLTVFSSPGLSFPIQEFKDTNDFLNFTAKA---IYGMCEFKQL 780
            :....|:::..|....||..:.||.|.|:   .:.::....|...:. .|:|   |:.:..:::.
  Rat   225 SWWATNYVSDWWEEYIYLRGRGPLMVNSN---YYAMEMLYITPTHIQ-AARAGNTIHAILLYRRT 285

  Fly   781 VDQNKI-PVVQMGKH-QLDNSQFGKIFGTVRKPGRFCDTIEQYNDADYIVVVYNNNYFKLPIYSQ 843
            :|:.:: |:..:|.. .|.::|:.::|.|.|.||...|||:...|:.:|||.:...|||:.:| .
  Rat   286 LDREELKPIRLLGSTIPLCSAQWERLFNTSRIPGEETDTIQHIKDSRHIVVYHRGRYFKVWLY-H 349

  Fly   844 SGALLHAHTLRDALQDILECPI--KVGK-HFGLLTHDNRSNWAEAYTVLCRPHGNADTVETIEQS 905
            .|.||....|...:|.||:.|.  :.|: ....||..:|..||:..........|..:::.:|::
  Rat   350 DGRLLRPRELEQQMQQILDDPSEPQPGEAKLAALTAADRVPWAKCRQTYFARGKNKQSLDAVEKA 414

  Fly   906 LFVVCLDNCVPTPKGEERIVQ----AHQLLHGGGVRQNSANRWMDKTIQLIVNPNGLAGFCYEHS 966
            .|.|.||......:.|:....    |..||||     ...:||.||:|..:|..|...|...|||
  Rat   415 AFFVTLDESEQGYREEDPEASIDSYAKSLLHG-----RCFDRWFDKSITFVVFKNSKIGINAEHS 474

  Fly   967 PADCQPLAMLMDFV------QLKVTEPNYGCEGCEADKKVTSNLLKFQPVNEC---INLWLCQAR 1022
            .||...:..|.::|      ||..:|..: |:|...........|::....||   |:..|..| 
  Rat   475 WADAPVVGHLWEYVMATDVFQLGYSEDGH-CKGDTNPNIPKPTRLQWDIPGECQEVIDASLSSA- 537

  Fly  1023 RNIQRIVSQLQMNVINFECYGKCFIKAQGLNPDSYIQMALSLAYYSMYGKIPAQYESAHLRIFHE 1087
               ..:.:.:.::...|:.:||..||....:||::||:||.||:|...||....||::..|:|.|
  Rat   538 ---SLLANDVDLHSFPFDSFGKGLIKKCRTSPDAFIQLALQLAHYKDMGKFCLTYEASMTRLFRE 599

  Fly  1088 GRTETIRSTSNESKTFLLAMQSEKASMSEKLAALQKAVDAHEKLIKEAINGQGIDRHLFGLQEMA 1152
            |||||:||.:.||..|:.||...|::..::|...:.|.:.|:.|.:.|:.|.|||||||.|  ..
  Rat   600 GRTETVRSCTMESCNFVQAMMDPKSTAEQRLKLFKIACEKHQHLYRLAMTGAGIDRHLFCL--YV 662

  Fly  1153 LEKGMPIPEFFRSKGYVRSVTFQLFTSQVA---------TSNEGFMA----YGPLLSDGYGVCY- 1203
            :.|.:.:...|..:  |.|..::|.|||..         ..|..:::    :||:..|||||.| 
  Rat   663 VSKYLAVDSPFLKE--VLSEPWRLSTSQTPQQQVELFDFEKNPDYVSCGGGFGPVADDGYGVSYI 725

  Fly  1204 NPKESKITFAISAWKSCKEINTIRFAKAIKKSLNDMRKLILLT 1246
            ...|:.|.|.||:..|..|.::.||.|.:::::.|:..|..||
  Rat   726 IVGENFIHFHISSKFSSPETDSHRFGKHLRQAMMDIITLFGLT 768

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5122NP_609601.1 Carn_acyltransf 665..1240 CDD:279140 181/616 (29%)
Cpt1aNP_113747.2 CPT_N 1..47 CDD:406797
Carn_acyltransf 171..761 CDD:395612 178/608 (29%)
Coenzyme A binding. /evidence=ECO:0000250 555..567 4/11 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D559299at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

Return to query results.
Submit another query.