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Protein Alignment CG9932 and prdm9

DIOPT Version :9

Sequence 1:	NP_609599.1	Gene:	CG9932 / 34701	FlyBaseID:	FBgn0262160	Length:	2171	Species:	Drosophila melanogaster
Sequence 2:	NP_957196.1	Gene:	prdm9 / 393876	ZFINID:	ZDB-GENE-040426-1319	Length:	853	Species:	Danio rerio

Alignment Length:	982	Identity:	172/982 - (17%)
Similarity:	286/982 - (29%)	Gaps:	338/982 - (34%)

- Green bases have known domain annotations that are detailed below.

  Fly  1221 PSNANSNSVVGNGLRLDAVYVASSTNNTTTPPP-----PPTNSVSKPNASPLPVTTTPTPISTAT 1280
            ||...:..:.|:.....:|.:....::|....|     ...:.:.:......|..|..:|.:..|
Zfish     9 PSEEQNLEIQGSATNCYSVVIIEEQDDTFNDQPFYCEMCQQHFIDQCETHGPPSFTCDSPAALGT 73

  Fly  1281 P----LAHPLGAGNHRSSSSHHN----DQNHAPPSHM---AGDGCHLASGLTHAHIINTNTKANP 1334
            |    |..|.|....|||.||..    :|....|..|   ..||..:           :..||..
Zfish    74 PQRALLTLPQGLVIGRSSISHAGLGVFNQGQTVPLGMHFGPFDGEEI-----------SEEKALD 127

  Fly  1335 SSNSFPSSSSSSSSSSMASTSSAAGSASASASSTTSSPPPPAASSSASAYMAAMAPQKHVPTVAQ 1399
            |:||:.....::..|.:            .|...|        .|:...::.....:.....||.
Zfish   128 SANSWVICRGNNQYSYI------------DAEKDT--------HSNWMKFVVCSRSETEQNLVAF 172

  Fly  1400 MSHPQTRFHSHSPGSPSL------------------------LTMADGDRREPSPYR--CGHCHQ 1438
            ..:.:..|....|.||..                        ..::.|...|.:...  |..||.
Zfish   173 QQNGRILFRCCRPISPGQEFRVWYAEEYAQGLGAIWDKIWDNKCISQGSTEEQATQNCPCPFCHY 237

  Fly  1439 VSNWKHVIQRHCRLKHSGDIRIETLERGASVSANAPPIY------RPLGAGASNESQSHIHNPSN 1497
              ::..::..|..:|.:                 .|..|      .||        :|..|.|..
Zfish   238 --SFPTLVYLHAHVKRT-----------------HPNEYAQFTQTHPL--------ESEAHTPIT 275

  Fly  1498 PITSNILKSGSNTNANSNINSNSAQPLLLTTKQLEQIFHTPLSASAAAVVNAANTQQDIQAAAAY 1562
            .:...::       |:....|...||  :|....|||     |......::......:..|:..|
Zfish   276 EVEQCLV-------ASDEALSTQTQP--VTESPQEQI-----STQNGQPIHQTENSDEPDASDIY 326

  Fly  1563 WAA--------ACKAVVANSSAEELLQLQQNDQIEITRLPTTTEHSIGSSGNNTKSKQQKCPVCP 1619
            .||        ||  |....|......|:::.:         |.||        |.|...|..|.
Zfish   327 TAAGEISDEIHAC--VDCGRSFLRSCHLKRHQR---------TIHS--------KEKPYCCSQCK 372

  Fly  1620 YISESKSQMNYHVSLHKPTQ------------YECRLCTFVCAKKQHLSSHMRTVHQQQ---MVA 1669
            ......:.:..|...|:..:            |.|..||.....|.:|..|::..|..:   :|.
Zfish   373 KCFSQATGLKRHQHTHQEQEKNIESPDRPSDIYPCTKCTLSFVAKINLHQHLKRHHHGEYLRLVE 437

  Fly  1670 SGAGAA-------------------------AGAAGGVGGGGAASLGLDFSVALQLAAAAKQVQQ 1709
            ||:..|                         ......:.|.|..          :..|..:...:
Zfish   438 SGSLTAETEEDHTEVCFDKQDPNYEPPSRGRKSTKNSLKGRGCP----------KKVAVGRPRGR 492

  Fly  1710 LPASTPLSIDLSQIQ------MDAASDAE-LNPQQLP-----------PEYQYKLI--------- 1747
            .|.:..|.:::.:|.      ..:.||.| |...|.|           |:...:.|
Zfish   493 PPKNKNLEVEVQKISPICTNCEQSFSDLETLKTHQCPRRDDEGDNVEHPQEASQYICGECIRAFS 557

  Fly  1748 ----------------SY-CPRCPARFAQKHNDERNAKQELEQHLLAHSDQEPEDQDPSYVCAYC 1795
                            || ||.|...|.:..|..|:.:       ..||.::|      |.|..|
Zfish   558 NLDLLKAHECIQQGEGSYCCPHCDLYFNRMCNLRRHER-------TIHSKEKP------YCCTVC 609

  Fly  1796 EYRTSEETMLQLHRAVHM---SHYQEKC-------------------QELYRNCKEDVEYPAPKL 1838
            ....::.:.|:.|:..|:   ||.|...                   :.||::.:.  .:|
Zfish   610 LKSFTQSSGLKRHQQSHLRRKSHRQSSALFTAAIFPCAYCPFSFTDERYLYKHIRR--HHP---- 668

  Fly  1839 LQLTGPETIWVVDNELSLQLLQQTTGGAVS--------------TSTGGFDNQNSLLKKQLESGG 1889
                          |:||:.|....||.:|              ::..||.|.:..  ||
Zfish   669 --------------EMSLKYLSFQEGGVLSVEKPHSCSQCCKSFSTIKGFKNHSCF--KQ----- 712

  Fly  1890 GQMVPLPLKVSVNKNEAEVPEEDEERHSSSTPSTSASVATSDLAADGSSDAGSVDMPQSIPAPER 1954
            |:.|.|........:.....::.:..|:...|.|.:....|.:      .:|.:::.......|:
Zfish   713 GEKVYLCPDCGKAFSWFNSLKQHQRIHTGEKPYTCSQCGKSFV------HSGQLNVHLRTHTGEK 771

  Fly  1955 ---CLHCPFETQQHEELMQHLQKHACVNPPPPNCQKCAHCDYNANEEAEMEEHTALHFNAGEKLK 2016
               |..|....:|..:|.:|.|||:.|.|    || |..|..:.:....::.|..||  .|.||
Zfish   772 PFLCSQCGESFRQSGDLRRHEQKHSGVRP----CQ-CPDCGKSFSRPQSLKAHQQLH--VGTKL- 828

  Fly  2017 SVEFFTC 2023
                |.|
Zfish   829 ----FPC 831

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.