DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9932 and tra-4

DIOPT Version :9

Sequence 1:NP_609599.1 Gene:CG9932 / 34701 FlyBaseID:FBgn0262160 Length:2171 Species:Drosophila melanogaster
Sequence 2:NP_001370327.1 Gene:tra-4 / 180575 WormBaseID:WBGene00018740 Length:543 Species:Caenorhabditis elegans


Alignment Length:323 Identity:60/323 - (18%)
Similarity:97/323 - (30%) Gaps:130/323 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   216 PDVPTLEQVKRELLLQE---------EKLQRDIQAFNQRQR-----EEQQREQQRELELVATSAY 266
            |:.||..::.|:|:.|:         ..::::|...:.|.:     ||..|||:.|:||......
 Worm   200 PNAPTDVRIVRKLIRQKMVRCKKCKNRFIEKNIYERHLRDKHPDLYEEYIREQEEEVELQRLEEI 264

  Fly   267 E----RQMQ----VLRDYERQSPAEPPT----PSPTSGSATP----------------------- 296
            |    .::|    :..:.|...|:|.|.    |...:|...|                       
 Worm   265 EANRIEELQTGGFIPPENEISQPSEDPNYIPLPGENNGGLVPRFDYYGRIKQLKRPYKKKVSPQC 329

  Fly   297 ----------------------------------------------------------PSNGEEP 303
                                                                      |......
 Worm   330 PFCDKRFRNEFSLKKHFAKKHEEMVEFQQCLKCFKCVENDAEMANHDCELTYVCFECTPIRNLCT 394

  Fly   304 QNRLL--------------KCSACEFTTLYRTQLRAHELAEHGKTKFFRCDKCSYVTHIKARFSK 354
            .||||              :||.|....|...:||.|:...|..||.|:|..|..:...:.....
 Worm   395 DNRLLNHRKKFHRGANSGFRCSFCNMKFLTPRKLRKHKKMSHVFTKTFQCHFCEEIFISEVAVMT 459

  Fly   355 HVKYHS-MPMIKCVTCDFRTPYKWNLDRHMKNHGGAGAFKCAACDFTADIKQSLTVHEMNHHV 416
            |.:.|: :...:|..||||......::.|.::..|   :.||.|.     ::.....||.|||
 Worm   460 HERMHTGIIKFECKVCDFRANRYTAMEEHKRDEHG---YVCAICH-----ERHAEYPEMKHHV 514

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9932NP_609599.1 C2H2 Zn finger 339..359 CDD:275368 3/19 (16%)
C2H2 Zn finger 366..386 CDD:275368 6/19 (32%)
C2H2 Zn finger 394..414 CDD:275368 5/19 (26%)
C2H2 Zn finger 816..836 CDD:275370
C2H2 Zn finger 844..862 CDD:275370
tra-4NP_001370327.1 COG5236 <329..>519 CDD:227561 35/194 (18%)
C2H2 Zn finger 415..436 CDD:275368 7/20 (35%)
C2H2 Zn finger 444..464 CDD:275368 3/19 (16%)
C2H2 Zn finger 472..490 CDD:275368 6/17 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S8328
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.950

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