DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment kek1 and Lingo4

DIOPT Version :9

Sequence 1:NP_001303320.1 Gene:kek1 / 34688 FlyBaseID:FBgn0015399 Length:880 Species:Drosophila melanogaster
Sequence 2:NP_796224.1 Gene:Lingo4 / 320747 MGIID:2444651 Length:618 Species:Mus musculus


Alignment Length:611 Identity:141/611 - (23%)
Similarity:201/611 - (32%) Gaps:221/611 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 QPMTEDGYMPPSQHFPPTHSDLDP-------PAQQQSTCQTVCACKWKGGKQT--VECIDRHLIQ 114
            :|...|....|.|.:.|    ..|       |....|:|.|||.|.    .||  |.|..|.|..
Mouse    22 RPQGMDAATAPKQAWLP----WSPLLFLLLLPGGSISSCPTVCDCT----SQTRAVFCAHRRLDT 78

  Fly   115 IPEHIDPNTQVLDMSGNKLQTLSNEQFIRANLLNLQKLYLRNCKIGEIERET------------- 166
            ||..:..:|::||:|||:|..|......|  |..||:|.|...::..:|...             
Mouse    79 IPGGLPLDTELLDLSGNRLWGLQRGMLSR--LGQLQELDLSYNQLSTLEPGAFHGLQSLLTLRLQ 141

  Fly   167 -----------FKGLTNLVELDLSHNLLV------------------------------------ 184
                       |.|||.|..|||..|.:|                                    
Mouse   142 GNRLRIVGPGIFSGLTALTLLDLRLNQIVLFLDGAFSELGSLQQLEVGDNHLVFVAPGAFAGLAK 206

  Fly   185 ------------TVPSLALGHIPSLRELTLASNHIHKIESQA-----------FGNTPSLHKLD- 225
                        |||.|||..:|:|..|.|....|.::.:.|           ..:.|||..|| 
Mouse   207 LSTITLERCNLSTVPGLALAQLPALVALRLRELDIERLPAGALRGLGQLKELEIHHWPSLEALDP 271

  Fly   226 ------------LSHCDIQTISAQAFGGLQGLTLLRLNGNKLSELLPKTIETLSRL--------- 269
                        ::.|::.::..||...|..|.:|.|:.|.:|.:..:.:..|.||         
Mouse   272 GSLVGLNLSSLAITRCNLSSVPFQALHHLSFLRILDLSQNPISAIPARRLSPLVRLQELRLSGAC 336

  Fly   270 ---------HG------------------------------IELHDNPWLCDCRLRDTKLWL--M 293
                     ||                              :.|..||..|||||    |||  :
Mouse   337 LTSIAAHAFHGLTAFHLLDVADNALQTLEETAFPSPDKLVTLRLSGNPLTCDCRL----LWLLRL 397

  Fly   294 KRNIPYPVAPVCSGGPERIIDRS---FAD-LHVDEFACRPEMLPIS--HYVEAAMGENASITCRA 352
            :|.:.:..:|....||:.:..:|   |:| |....|.|:|.::..|  .:|.|..|.:|..:|..
Mouse   398 RRRLDFGTSPPACAGPQHVQGKSLREFSDILPPGHFTCKPALIRKSGPRWVIAEEGGHAVFSCSG 462

  Fly   353 RAVPAANINWY-----WNGRLLANNSAFTAYQRIHMLEQVEGGFEKRSKLVLTNAQETDSSEFYC 412
            ...||..::|.     |.||:          .|:.:||  :|..|.||      .|..|...:.|
Mouse   463 DGDPAPTVSWMRPQGAWLGRV----------GRVRVLE--DGTLEIRS------VQLRDRGAYVC 509

  Fly   413 VAENRAGMAEANFTLHVSMRAAGMASLGSGQIV-------------GLSAAL-VALIVFALGVIM 463
            |..|.||.......|.|........:|....|.             |::..| |..:.|...|.:
Mouse   510 VVSNVAGNDSLRTWLEVIQVEPPNGTLSDPNITMPGIPGPFFLDSRGVAMVLAVGFLPFLTSVTL 574

  Fly   464 CLLL---------RVKRQPYVDSKTP 480
            |..|         |||.....|...|
Mouse   575 CFGLIALWSKGKGRVKHHMTFDFVAP 600

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kek1NP_001303320.1 leucine-rich repeat 103..122 CDD:275380 8/20 (40%)
LRR_RI <119..277 CDD:238064 57/301 (19%)
leucine-rich repeat 123..148 CDD:275380 10/24 (42%)
LRR_8 148..207 CDD:290566 25/130 (19%)
leucine-rich repeat 149..172 CDD:275380 8/46 (17%)
leucine-rich repeat 173..196 CDD:275380 12/70 (17%)
LRR_8 195..255 CDD:290566 19/83 (23%)
leucine-rich repeat 197..220 CDD:275380 5/33 (15%)
leucine-rich repeat 221..244 CDD:275380 7/35 (20%)
leucine-rich repeat 245..268 CDD:275380 6/22 (27%)
LRRCT 277..327 CDD:214507 19/55 (35%)
IG_like 338..429 CDD:214653 26/95 (27%)
Ig 346..426 CDD:143165 22/84 (26%)
Lingo4NP_796224.1 LRRNT 56..89 CDD:214470 14/36 (39%)
leucine-rich repeat 69..86 CDD:275380 6/16 (38%)
leucine-rich repeat 87..110 CDD:275380 10/24 (42%)
LRR_8 90..145 CDD:290566 14/56 (25%)
leucine-rich repeat 111..134 CDD:275380 5/22 (23%)
LRR_RI 112..345 CDD:238064 43/232 (19%)
LRR_8 134..193 CDD:290566 10/58 (17%)
leucine-rich repeat 135..158 CDD:275380 3/22 (14%)
leucine-rich repeat 159..182 CDD:275380 6/22 (27%)
LRR_8 182..237 CDD:290566 9/54 (17%)
leucine-rich repeat 183..206 CDD:275380 0/22 (0%)
leucine-rich repeat 207..230 CDD:275380 6/22 (27%)
leucine-rich repeat 231..254 CDD:275380 5/22 (23%)
leucine-rich repeat 255..302 CDD:275380 9/46 (20%)
LRR_8 278..334 CDD:290566 12/55 (22%)
leucine-rich repeat 303..326 CDD:275380 6/22 (27%)
LRR_8 326..385 CDD:290566 6/58 (10%)
leucine-rich repeat 327..350 CDD:275380 3/22 (14%)
leucine-rich repeat 351..369 CDD:275380 0/17 (0%)
leucine-rich repeat 375..387 CDD:275378 3/11 (27%)
IG_like 445..526 CDD:214653 26/98 (27%)
Ig 456..526 CDD:299845 23/87 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm8825
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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